PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000322567
Common NameDAM1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 27828.2 Da    PI: 5.7404
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000322567genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.63.9e-241356851
                   HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rqvtfskRr gi+KKA ELS+LC+ evaviifs+tgkl+++ss
  MDP0000322567 13 ARQVTFSKRRRGIFKKAGELSILCESEVAVIIFSQTGKLFDFSS 56
                   69****************************************96 PP
2K-box26.33.1e-101191871583
          K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                    +  +++  +L+ke+e    ++R+++G dLe+L+l eLq+Le+ +e sl ++ ++K   l+e  ++l ++
  MDP0000322567 119 QLEKENNIRLRKELEDKSCKLRQMKGVDLEDLDLDELQKLEKLVEASLGRVIQTKGAELIEANNQLSHR 187
                    5556666799999999999********************************999988887777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.343158IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-27257IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-22260IPR002100Transcription factor, MADS-box
PfamPF003193.1E-211354IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-142035IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-143556IPR002100Transcription factor, MADS-box
PfamPF014861.2E-6117184IPR002487Transcription factor, K-box
PROSITE profilePS512978.502118219IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKIKIKKIDY LPARQVTFSK RRRGIFKKAG ELSILCESEV AVIIFSQTGK LFDFSSSRLW  60
SSPPXNQDEL VSFPFVDSHA IESDKLIMHV NRRTKDVIAR YNSHIGGEKS DQPTIHQLQL  120
EKENNIRLRK ELEDKSCKLR QMKGVDLEDL DLDELQKLEK LVEASLGRVI QTKGAELIEA  180
NNQLSHRMVM YPRGDIGPEA ILELENLNNI GEESXTSEST TNVTTCSNSS LSLEDDCSDI  240
LSLKLG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.140341e-120leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1649960.0KP164996.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315664.11e-179MADS-box protein AGL24-like
TrEMBLA0A0D5CTU01e-178A0A0D5CTU0_MALDO; Dormancy-associated MADS-box transcription factor
STRINGXP_008341076.11e-121(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-32AGAMOUS-like 24
Publications ? help Back to Top
  1. Wisniewski M,Norelli J,Artlip T
    Overexpression of a peach CBF gene in apple: a model for understanding the integration of growth, dormancy, and cold hardiness in woody plants.
    Front Plant Sci, 2015. 6: p. 85
    [PMID:25774159]