PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000316517

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WOX

Protein Properties

Length: 399aa MW: 45501.5 Da PI: 8.5404

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000316517	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.3	9.7e-22	20	80	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ MDP0000316517 20 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 80 89***************99************************************97 PP
2	Wus_type_Homeobox	100.9	9e-33	19	82	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq MDP0000316517 19 ARQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRKQ 82 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-18	15	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	16	81	IPR001356	Homeobox domain
SMART	SM00389	1.4E-14	18	85	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-19	19	84	IPR009057	Homeodomain-like
CDD	cd00086	3.49E-14	20	82	No hit	No description
Pfam	PF00046	1.7E-19	20	80	IPR001356	Homeobox domain
Pfam	PF10181	2.7E-13	303	366	IPR019328	GPI-GlcNAc transferase complex, PIG-H component, conserved domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0017176	Molecular Function	phosphatidylinositol N-acetylglucosaminyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGNLYCDPLM TSTGHKITAR QRWTPTPVQL QILERLFEQG NGTPSKQKIK EITTELSQHG 60 QISETNVYNW FQNRRARSKR KQQNAACNHA ESEVETEVDS PKDKKTRPEE TFQSQQHSAQ 120 RTEDLCFXSP EISSDLHFLD PHATTVDKMF PSHSGLRSSR HLSEMSFYDE VLANSRGRGF 180 ERLLGLSSDR HCWLKEDFVS DEAIKGRLYE SLVWGNMRSS ITSSKYTYLH DCKWPCEAVD 240 VHHIIVKKSG AKGFFRYFFS LVILATAFYL FLVKEKSVVI VLWSLLLNAF LVKLLQKSVE 300 KESVVIMPAF GVQLETHYAS GKVIRRFVPM DKILKPVXLE CXTPVTCYWS LSLIVHGEAE 360 LVLVFKDLRP PMKMLVPIWK ALCAATGTKG SSNTCTEDG

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGNLYCDPLM TSTGHKITAR QRWTPTPVQL QILERLFEQG NGTPSKQKIK EITTELSQHG  60
QISETNVYNW FQNRRARSKR KQQNAACNHA ESEVETEVDS PKDKKTRPEE TFQSQQHSAQ  120
RTEDLCFXSP EISSDLHFLD PHATTVDKMF PSHSGLRSSR HLSEMSFYDE VLANSRGRGF  180
ERLLGLSSDR HCWLKEDFVS DEAIKGRLYE SLVWGNMRSS ITSSKYTYLH DCKWPCEAVD  240
VHHIIVKKSG AKGFFRYFFS LVILATAFYL FLVKEKSVVI VLWSLLLNAF LVKLLQKSVE  300
KESVVIMPAF GVQLETHYAS GKVIRRFVPM DKILKPVXLE CXTPVTCYWS LSLIVHGEAE  360
LVLVFKDLRP PMKMLVPIWK ALCAATGTKG SSNTCTEDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	81	RRARSKRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9S9Q3	1e-142	W9S9Q3_9ROSA; WUSCHEL-related homeobox 13
STRING	XP_010103252.1	1e-143	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-56	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	MDP0000316517