PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314422
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 610aa    MW: 69146 Da    PI: 9.5413
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314422genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.7e-16418457241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
         SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 
                     ie++  r v+fskRr  ++K A+EL+++C+++v+++ifs
  MDP0000314422 418 LIESQHARXVSFSKRRSSLFKNASELCTMCAVQVLLVIFS 457
                    59*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.708409469IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-18409468IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-23410492IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-10411431IPR002100Transcription factor, MADS-box
PfamPF003192.1E-16419465IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-10431446IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-10446467IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MNEEDGKYLA FSTRATNESS SKSSIRLRSA KFIPHQPMDF ALSLRSVPPE ISHQSIQIVT  60
KVFRXEKTTH KXCNTMGTRX IQKKLVSIVT SCIMVLVGST ANLSVMQDNS ESEWLPQTNQ  120
LVSLRLDSKA LIRYYLDYSV FGLSGLAKQH GVTGMEAPIA SYRDSSSTSD SESPASPPSP  180
PPELNNPQEY THVLPVFWGG FSSGESVSED TDGAGEAGRR RIRKILQLAT LNNPRICLFV  240
SLIENLPFLI KILLESAIRN CDEFQVDVWL ETNYRKWVGV LPYPQISSTP LLACHLWVVG  300
VKDRVXXVAQ XLLAMVKVRI LEFEXXTLFT SXPFSLPRDP LLHLYNHTRS SSTHSSIFLD  360
PHQPQAXLLP WRXPLKDCIF RRLGFRRLWP NRAVKALHTA FLVLIERMRG RKKIQMELIE  420
SQHARXVSFS KRRSSLFKNA SELCTMCAVQ VLLVIFSLGR KPFSFGHPSV HSVLNRFHQF  480
QNPDASTNQN EATKEPVMQG LNDSFSHLLE QVKFEQKRGK KLNRKXMEHS GPDWLKAPMD  540
SLNLEELRKV KETLVDVKKK IKKQXDELLA EPLASSANNS IELFHCPETN LVGDISSVHP  600
QGSLTFREEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2040945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-31AGAMOUS-like 61