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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000314259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | CO-like | ||||||||
Protein Properties | Length: 454aa MW: 50533.1 Da PI: 5.0537 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.9 | 1.2e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v MDP0000314259 16 ARACDSCIKKRARWYCAADDAFLCQACDSAVHSAnqlahrHKRV 59 578****************************9668899556655 PP | |||||||
2 | CCT | 68.3 | 2e-23 | 399 | 442 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a MDP0000314259 399 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKKA 442 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.5E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.594 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-7 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.78E-9 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 4.0E-18 | 399 | 441 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.063 | 399 | 441 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MNSSKKVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSAVHSAN QLAHRHKRVL 60 LKTASSLKPS NKDDRASAVS ETSAAPSWHR GFTRKARTPR GGKSMTHHGK SQDGVRNLFP 120 QVPEVGGDDN NSYDEENTED QQLLYRVPIF DPFVAELCNN SDXSKEDAVP NYEATNLITV 180 SDHVGSESKA VSSLPNFNGH DAFLPPSDMD LAEFAADVDS LLGRGLDDDE CFGMERLGLM 240 DCXKKESNGR VKLEEDDDQE GTDNVDFMGC QLGESEIDMX REPFALNIED YDDSPASCGE 300 QDDKLRVGIY SNCSTEDHER EEADDDAXDN SKKRKMILRL DYEAVITAWD GSPWTSGDRP 360 DFDSECLPDY MSACGAELHY PYGDXNGLGX HPAMADGXRE ARVSRYREKR RTRLFSKKIR 420 YEVRKLNAEK RPRMKGRFVK KASFAGSAFP VPAK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 409 | 425 | RRTRLFSKKIRYEVRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.5281 | 5e-98 | bud| fruit| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008360050.2 | 0.0 | zinc finger protein CONSTANS-LIKE 6-like | ||||
TrEMBL | A0A498I7T4 | 0.0 | A0A498I7T4_MALDO; Uncharacterized protein | ||||
STRING | XP_008389292.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 6e-93 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | MDP0000314259 |