PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000286643
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29415.3 Da    PI: 8.4451
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000286643genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871.1e-27959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k ien+snrqvt+skRrngi+KKA+E+ vLCda+v++ii+ss+gk+ ey+s
  MDP0000286643  9 KXIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIYSSSGKMVEYCS 59
                   68***********************************************96 PP
2K-box76.19.1e-2671143173
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                    y+ +sgk+l++ak+e+l++e++++kk ++++q e+Rhl+Ged++sL++ eL+ Le++Le++l++iR+k+  ++
  MDP0000286643  71 YHGQSGKKLWDAKHENLSNEVDRVKKDNDSMQVELRHLKGEDITSLNHVELMALEEALENGLTSIRDKQASFF 143
                    6778999*************************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.02161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-35296IPR002100Transcription factor, MADS-box
CDDcd002653.24E-37280No hitNo description
PRINTSPR004047.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.5E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-1682143IPR002487Transcription factor, K-box
PROSITE profilePS5129712.11284208IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGKIEIKX IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIYSS SGKMVEYCSP  60
STTLTEILDK YHGQSGKKLW DAKHENLSNE VDRVKKDNDS MQVELRHLKG EDITSLNHVE  120
LMALEEALEN GLTSIRDKQA SFFHYSCFKQ SVVICYVISC YIFQLIILNS FVPFLSQSKF  180
VDMMRDNGKA LEDENKRLTY ELQKQQEMKI EENVRNMENG YHQRQLGNYN NNQQQIPFAF  240
RVQPIQPNLQ ERI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A6e-16191183MEF2 CHIMERA
6bz1_B6e-16191183MEF2 CHIMERA
6bz1_C6e-16191183MEF2 CHIMERA
6bz1_D6e-16191183MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2914900.0AJ291490.1 Malus domestica mRNA for Pistillata MADS-box protein (pi gene).
GenBankKP1640190.0KP164019.1 Pyrus pyrifolia clone PpBS-2 B-Sister-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280926.11e-149floral homeotic protein PMADS 2
SwissprotQ0HA251e-102MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A498JEA01e-151A0A498JEA0_MALDO; Uncharacterized protein
STRINGXP_008378449.11e-149(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]