PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000281689
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 283aa    MW: 32562.6 Da    PI: 9.2316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000281689genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-114892655
                   HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    e Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  MDP0000281689 48 VEXERQRRKKLNQRFYPLRAVVPNiS------KMDKASLLGDAITYITDLQ 92
                   689*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-1740107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.1734291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-104596No hitNo description
PfamPF000104.3E-94892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-114897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1649107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVDGFNVQTR VSSSELLKDE SSTQIDERKP RKRGRKPDNG REEPLNNVEX ERQRRKKLNQ  60
RFYPLRAVVP NISKMDKASL LGDAITYITD LQMKIRVMET EKQMVNKGKQ FAGSRDCVRV  120
WLAXEEGWEP LTIKETKGEG KSFDSISKLK PRKEWSNDER SSSTFNQKAL NTLFTAVSPE  180
QFDYISXCTM AKEVWDILEV TKLLKNPRYG HIAYECAXTI KKKEKKNKAM NVTWRDNDSG  240
DASSSENEKD TTAFIGTIDG YDTXGSFVEE PDLKEVLRKY SNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-2640102264Transcription factor MYC2
5gnj_B1e-2640102264Transcription factor MYC2
5gnj_E1e-2640102264Transcription factor MYC2
5gnj_F1e-2640102264Transcription factor MYC2
5gnj_G1e-2640102264Transcription factor MYC2
5gnj_I1e-2640102264Transcription factor MYC2
5gnj_M1e-2640102264Transcription factor MYC2
5gnj_N1e-2640102264Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.128691e-129bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894061e-111KP689406.1 Prunus pseudocerasus isolate Unigene16868 bHLH transcription factor mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.14e-41bHLH family protein