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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MDP0000279087 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family |
bHLH |
Protein Properties |
Length: 196aa MW: 22723.2 Da PI: 9.5895 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MDP0000279087 | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 41.7 | 2.1e-13 | 50 | 96 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq
MDP0000279087 50 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 96
799***********************66......*****************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MNRMMVDGFN VQTRVSSSEL LKDESSAQID EGKPRKRGRK PANGREEPLN HVEAERQRRE 60 KLNQRFYALR AVVPNISKMD KASLLGDAIT YITDLQKKMR VMETEKQMVN NKGKQLPVPE 120 IDFQERLEDA VGLHQPPKSL LFNPSSICLV IQGGFLHMSR RLYDIFLSEY NTHRVLVRCI 180 SPPEYKAHHV FLIEDY
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_B | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_E | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_F | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_G | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_I | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_M | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_N | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP689406 | 1e-143 | KP689406.1 Prunus pseudocerasus isolate Unigene16868 bHLH transcription factor mRNA, complete cds. |