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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000279087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 196aa MW: 22723.2 Da PI: 9.5895 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 50 | 96 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq MDP0000279087 50 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 96 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.831 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-19 | 49 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.83E-13 | 49 | 98 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-19 | 50 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-11 | 50 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-14 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MNRMMVDGFN VQTRVSSSEL LKDESSAQID EGKPRKRGRK PANGREEPLN HVEAERQRRE 60 KLNQRFYALR AVVPNISKMD KASLLGDAIT YITDLQKKMR VMETEKQMVN NKGKQLPVPE 120 IDFQERLEDA VGLHQPPKSL LFNPSSICLV IQGGFLHMSR RLYDIFLSEY NTHRVLVRCI 180 SPPEYKAHHV FLIEDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_B | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_E | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_F | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_G | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_I | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_M | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
5gnj_N | 9e-32 | 44 | 128 | 2 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12869 | 1e-161 | bud| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689406 | 1e-143 | KP689406.1 Prunus pseudocerasus isolate Unigene16868 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354912.1 | 2e-82 | PREDICTED: transcription factor bHLH3-like | ||||
Refseq | XP_009354914.1 | 2e-82 | PREDICTED: transcription factor bHLH3-like | ||||
Swissprot | A0A3Q7H216 | 4e-50 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A498JSY9 | 1e-86 | A0A498JSY9_MALDO; Uncharacterized protein | ||||
STRING | XP_009354912.1 | 6e-82 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2938 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000279087 |
Publications ? help Back to Top | |||
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