PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000261079

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 294aa MW: 33294.1 Da PI: 7.1728

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000261079	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	3e-10	31	80	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrw 44 +W t+E++ll++avk++G ++W+t+a +++ + t+ +c +++ MDP0000261079 31 SSWGTWEELLLACAVKRHGVHDWDTVAMELQaktslppLLTTASNCNLKY 80 57*****************************7666666555666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0054	29	86	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-8	31	82	IPR001005	SANT/Myb domain
CDD	cd00167	9.33E-5	33	65	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MKGGAAADTP SFNNNNNNIT TTSDQTTTST SSWGTWEELL LACAVKRHGV HDWDTVAMEL 60 QAKTSLPPLL TTASNCNLKY LDLSRRFHSR HQNDDVHHDP HNNNTTNIPW LDDLRKLRVA 120 QLRQELHGYD VSXVXFXLFF HFKXHLKVKR LEEEREDSFK DDDPKPDLEE EEQQDSNRHR 180 SENDKTVRGK PDGSKPDHEN QSVQEIAPSL NRARFRPVPM NRPKRQGAGS RIRTQTKEAP 240 KRWLRSGGYG AGKGKVXXTG GAEGEQRGAE FGELDEEKER ETPSQNGGPR AAAQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY653225	1e-140	AY653225.1 Malus x domestica TFCR (TFCR) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018502620.1	1e-110	PREDICTED: uncharacterized protein LOC103945928
TrEMBL	A0A498JE58	1e-110	A0A498JE58_MALDO; Uncharacterized protein
STRING	XP_008356758.1	1e-118	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1870	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	8e-27	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	MDP0000261079