PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243628
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 455aa    MW: 51328.9 Da    PI: 9.165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243628genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-11156199755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    e Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  MDP0000243628 156 EEERQRRKKLNQRFYPLRAVVPNiS------KMDKASLLGDAITYITDLQ 199
                    77*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-16148214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.167149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-11155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8156199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15158214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-10158203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAWVFWSWAR PWSGMGCCSY RGYLILGLLT LGFLVLGRAG FPCGAGLGLL LQGGMGLGLR  60
LQGDACSLGL DLAMTAPFCK VYQSKKNSSK LFIFNGSDLL VKNLLGAANF YIDTKTRVSS  120
SELLKDESST QIDERKPRKR GRKPDNGREE PLNNVEEERQ RRKKLNQRFY PLRAVVPNIS  180
KMDKASLLGD AITYITDLQM KIRVMETEKQ MVNKGKQFAG SRDCVRAKMK SYLWAQDDKV  240
WLAVEEGWEP LTIKETKGEG KSFDSISKLK PRKEWSNDER SSSTFSQKAL NTLFTAVSPE  300
QFDYISKCTM AKEVWDILEM KNIALKAXKE EESDGSXDDL FEDELVALTM QIRRFLNSQN  360
SKGREQRTNL DVSHDKASKS SRTSKCKSSN NRAQCHECQG YGHIAYECAN TIKKKEKKNK  420
AMNVTWRDND SGDASSSENE KDTTAFIGTI DGYDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-23147209264Transcription factor MYC2
5gnj_B1e-23147209264Transcription factor MYC2
5gnj_E1e-23147209264Transcription factor MYC2
5gnj_F1e-23147209264Transcription factor MYC2
5gnj_G1e-23147209264Transcription factor MYC2
5gnj_I1e-23147209264Transcription factor MYC2
5gnj_M1e-23147209264Transcription factor MYC2
5gnj_N1e-23147209264Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.128691e-123bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894061e-107KP689406.1 Prunus pseudocerasus isolate Unigene16868 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945627.15e-66uncharacterized protein LOC114819978
STRINGXP_008355683.11e-65(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-39bHLH family protein