PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000239026
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 160aa    MW: 17801.7 Da    PI: 7.0734
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000239026genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.21.2e-153290563
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                   ++ +r+ +NRe+ArrsR+RK++ ++ L+  + +L++eN++ ++ l+  ++++ ++++e+
  MDP0000239026 32 RKRKRMVSNRESARRSRLRKQKHLDDLTGQINQLKKENHQIISSLNITSQHYMNMEAEN 90
                   678999*********************************************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.9E-112673No hitNo description
SMARTSM003385.3E-172892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.3353093IPR004827Basic-leucine zipper domain
PfamPF001706.8E-133289IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-123285No hitNo description
CDDcd147021.09E-183384No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAPSSGTSSG SSSMSHQNSG SEEDLMALMD QRKRKRMVSN RESARRSRLR KQKHLDDLTG  60
QINQLKKENH QIISSLNITS QHYMNMEAEN SVLRAQADEL SSRLQSLNEI ASFLNANNGG  120
LYAAAADSSC FNEPNSSFFD PLNLSNLNQP IMASADMFHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13152RKRKRMVSNRESARRSRLRKQK
24450RRSRLRK
34451RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.131870.0bud| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008349913.11e-114bZIP transcription factor 11-like
SwissprotC0Z2L57e-47BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A498K1M41e-112A0A498K1M4_MALDO; Uncharacterized protein
STRINGXP_008349913.11e-113(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.12e-44G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]