PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000231274
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 351aa    MW: 36636.1 Da    PI: 5.7172
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000231274genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1795.7e-25259321163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN++L++el +l++e++kl+se+
  MDP0000231274 259 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENHSLREELHRLSEECEKLTSEN 321
                    89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.6E-33194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.6E-10116228No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-21253319No hitNo description
SMARTSM003385.8E-23259323IPR004827Basic-leucine zipper domain
PfamPF001702.8E-22259321IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.495261324IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.75E-12262318No hitNo description
CDDcd147021.31E-26264314No hitNo description
PROSITE patternPS000360266281IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGTGEEGTPS KPSKQASTPQ ELPTTPSYPD WSSSMQAYYG PGGTPPPFFA STVASSTPHP  60
YMWGAQHPMM PPYGTPVPYP AMYPPGGVYA HPSMVMTPGA PQPTPEFEGK GPDGKERAST  120
KKPKGTAGNA GLAGGKVVES GKATSGSGND GASQSGESGS EGSSDGSDDN ANNQEYGANK  180
KGSFDKMLAD GANAQNSTGT LVQASVPGKP VSMPGTNLNI GMDLWNASPA GAGAGAAKVR  240
GNPSGPPSAG GAEHWIQDER ELKRQKRKQS NRESARRSRL RKQAECEELQ ARVETLSNEN  300
HSLREELHRL SEECEKLTSE NANIKEELTR VCGPDLVANL EQQPGGGEGN S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281RRSRLRK
2275282RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.267860.0bud| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393453.10.0G-box-binding factor 1-like isoform X1
SwissprotP427741e-122GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A498HWJ70.0A0A498HWJ7_MALDO; Uncharacterized protein
STRINGXP_008393453.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.12e-95G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]