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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000229889 | ||||||||
Common Name | AFL1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LFY | ||||||||
Protein Properties | Length: 171aa MW: 18890.7 Da PI: 4.4264 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 202 | 4e-62 | 1 | 169 | 1 | 164 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklr........eleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88 mdp+afsa+lfkwd r ++ p++r+ eaav++a+ +aa aaa ++lr +le+lf+ayGvry+t+akiaelGftv+tL+d+kd+eldd MDP0000229889 1 MDPDAFSANLFKWDLRGMV-VPTNRVHLEAAVPPAA-TAAGAAAGYTLRpprelglgGLEDLFQAYGVRYYTAAKIAELGFTVNTLLDLKDDELDD 94 9*************99776.6778998888877776.67777788888888899999*************************************** PP FLO_LFY 89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsg 164 +m+sls+ifr++llvGeryGikaavraerrr+eee+ ++rr+ +s d++t aldalsqeglseepvq+eke++g+g MDP0000229889 95 MMSSLSQIFRWELLVGERYGIKAAVRAERRRFEEED--SRRRNPVSGDTTTnALDALSQEGLSEEPVQQEKEMVGTG 169 **********************************88..77777898887766*******************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 5.5E-67 | 1 | 169 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDPDAFSANL FKWDLRGMVV PTNRVHLEAA VPPAATAAGA AAGYTLRPPR ELGLGGLEDL 60 FQAYGVRYYT AAKIAELGFT VNTLLDLKDD ELDDMMSSLS QIFRWELLVG ERYGIKAAVR 120 AERRRFEEED SRRRNPVSGD TTTNALDALS QEGLSEEPVQ QEKEMVGTGX X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ude_A | 4e-28 | 54 | 151 | 8 | 110 | GINLFY PROTEIN |
4ude_B | 4e-28 | 54 | 151 | 8 | 110 | GINLFY PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB162028 | 0.0 | AB162028.1 Malus x domestica AFL1 mRNA for LEAFY protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959614.1 | 1e-118 | floricaula/leafy homolog | ||||
Swissprot | O04064 | 2e-71 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | Q19A12 | 1e-116 | Q19A12_MALDO; LEAFY-like | ||||
TrEMBL | Q5KTF1 | 1e-116 | Q5KTF1_MALDO; LEAFY protein | ||||
STRING | XP_008392692.1 | 3e-95 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 8e-26 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | MDP0000229889 |
Publications ? help Back to Top | |||
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