PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000228719
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 641aa    MW: 71218.6 Da    PI: 6.2456
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000228719genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.31.9e-24241294155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k +++Wt+eL +rF+ea++ + G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  MDP0000228719 241 KHKVEWTSELQDRFLEAINYI-GLDKAVPKRILEVMNVEGLTRENVASHLQKYRM 294
                    6799*****************.********************************7 PP
2Response_reg44.11.1e-15731761103
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                    +l+ d + +++  +  +l+  +  ev ++ ++ +al  l   e++++l+++D+ +p+  +Gl+++++ r e  klp iv +a ++e+++l+al+ G
  MDP0000228719  73 ILVLDVDADFLTFISGLLKLLKH-EVVTFMNPIQALSALllAEHKFHLVITDLYLPDiFSGLQVIRRVRDEF-KLPLIVASADNSESTILAALENG 166
                    67778888999999999999999.999999999999988778999************88***********99.*********************** PP

                    ESEEEESS-- CS
   Response_reg  94 akdflsKpfd 103
                    a  + +Kp+ 
  MDP0000228719 167 AVHYTVKPVC 176
                    ********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.8E-2270222No hitNo description
SMARTSM004485.5E-1671184IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521727.26E-2271189IPR011006CheY-like superfamily
PROSITE profilePS5011027.19872188IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-1273179IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.37E-1774175No hitNo description
Gene3DG3DSA:1.10.10.602.6E-25239298IPR009057Homeodomain-like
SuperFamilySSF466891.18E-17239298IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-25241294IPR006447Myb domain, plants
PfamPF002491.6E-5243293IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MLSPPLSHLT LAHSLSLSLS LLFYQLVTLF ELSSPVHMRR PKRGSSSMCR DKNLKGPQSD  60
IMPTSNIPIR LRILVLDVDA DFLTFISGLL KLLKHEVVTF MNPIQALSAL LLAEHKFHLV  120
ITDLYLPDIF SGLQVIRRVR DEFKLPLIVA SADNSESTIL AALENGAVHY TVKPVCFSDV  180
KNLWGLVLGA NETTRLDSNN NITNRRASVD GKSSSSTDGS NNSKRKRSSE EGKSTYISTK  240
KHKVEWTSEL QDRFLEAINY IGLDKAVPKR ILEVMNVEGL TRENVASHLQ KYRMFLRKVA  300
AKISVSKLSV ERAQQTRRAL LYQNILVERQ ASTLQQRRSF HENFELLVNQ NTAWLLNRLP  360
RGANDHEASS SRCLPRSGSY NTRQNPYVLN AQTHSGKQPL MMNTPNRFQP ANYCGIFQSN  420
SAQRNWSITN TSTDVAYNFG SNNANGVKIG TNIPSQILFS SSWDTSNGVK NYASGASSSQ  480
LSPMFAEGNN IGQENVNASA XEDPLQQQQQ QYGGTDLVNA SNNSSSHVTG VVDCSSSTEI  540
HLKDSTTGHD DFDISDIFWN ELQLESVTDD KGKGKEVMNS EQDNGDDFDS ITLDELNSEP  600
ATCDKENQGD MMDLEFDGDG LNFVDLSPDE VCSLCKLLSN V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-19238300264ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028954751.10.0two-component response regulator ARR18-like
TrEMBLA0A498KHL90.0A0A498KHL9_MALDO; Uncharacterized protein
STRINGXP_008346761.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2757122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-39response regulator 2