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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000186703 | ||||||||
Common Name | AFL2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LFY | ||||||||
Protein Properties | Length: 423aa MW: 46933.4 Da PI: 7.3269 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 613.4 | 4.3e-187 | 1 | 409 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklr........eleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88 mdp+afsa+lfkw r ++ p++r++ eaav++a+ +aaaaaa ++lr +le+lf+ayGvry+t+akiaelGftv+tL+dm+d+eldd MDP0000186703 1 MDPDAFSANLFKWGLRGMV-VPTNRVQLEAAVPPAA-AAAAAAAGCTLRppgelglgGLEDLFQAYGVRYYTAAKIAELGFTVKTLLDMTDDELDD 94 9*************99776.6788999999887776.66666777778889999999*************************************** PP FLO_LFY 89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekksee 183 +m+sls+ifr++llvGeryGikaavraerr+l+ee+ ++rr+++s d++t aldalsqeglseepvq+eke++gsgg+ ++e+++a e+++++ MDP0000186703 95 MMSSLSQIFRWELLVGERYGIKAAVRAERRHLDEED--SRRRNHVSGDTTTnALDALSQEGLSEEPVQQEKEMVGSGGGA--AWEVATAGERRKKQ 186 **********************************88..55555677776655************************9999..77777777644444 PP FLO_LFY 184 ekkkaskk...kqk.rkkkkelkseededeeeeededeegsgedge...erqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiake 272 +++k+ + + r+++++++ +ded+++ +d ++g+g +g erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iake MDP0000186703 187 RRMKKGQFrncSAGgRHNNDNNEGVDDEDDNDMDDMTGHGNGGGGGmlgERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKE 282 4444333301222202222222333566666666666666555554577*********************************************** PP FLO_LFY 273 rGekcPtk.............vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdi 355 rGekcPtk vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasna rrafkergenvGawrqacykplvaiaa qgwdi MDP0000186703 283 RGEKCPTKvfvkttwiknvfrVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNAXRRAFKERGENVGAWRQACYKPLVAIAAGQGWDI 378 *******9444444444444459************************************************************************* PP FLO_LFY 356 davfnahprLsiWYvPtkLrqLChlerskas 386 da+fn+hprLsiWYvPtkLrqLCh+er++a+ MDP0000186703 379 DAIFNSHPRLSIWYVPTKLRQLCHAERNNAT 409 ****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 2.9E-196 | 1 | 408 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MDPDAFSANL FKWGLRGMVV PTNRVQLEAA VPPAAAAAAA AAGCTLRPPG ELGLGGLEDL 60 FQAYGVRYYT AAKIAELGFT VKTLLDMTDD ELDDMMSSLS QIFRWELLVG ERYGIKAAVR 120 AERRHLDEED SRRRNHVSGD TTTNALDALS QEGLSEEPVQ QEKEMVGSGG GAAWEVATAG 180 ERRKKQRRMK KGQFRNCSAG GRHNNDNNEG VDDEDDNDMD DMTGHGNGGG GGMLGERQRE 240 HPFIVTEPGE VARGKKNGLD YLFHLYEQCR DFLIQVQNIA KERGEKCPTK VFVKTTWIKN 300 VFRVTNQVFR YAKKAGASYI NKPKMRHYVH CYALHCLDEE ASNAXRRAFK ERGENVGAWR 360 QACYKPLVAI AAGQGWDIDA IFNSHPRLSI WYVPTKLRQL CHAERNNATA SSSASGGGDH 420 LPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-105 | 236 | 418 | 4 | 173 | PROTEIN LEAFY |
2vy2_A | 1e-105 | 236 | 418 | 4 | 173 | PROTEIN LEAFY |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB056159 | 0.0 | AB056159.1 Malus x domestica AFL2 mRNA, complete cds. | |||
GenBank | AB162034 | 0.0 | AB162034.1 Malus x domestica AFL2 mRNA for LEAFY protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280945.1 | 0.0 | floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | Q8W3Y7 | 0.0 | Q8W3Y7_MALDO; AFL2 protein | ||||
STRING | XP_008392692.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-102 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | MDP0000186703 |
Entrez Gene | 103454879 |
Publications ? help Back to Top | |||
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