PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000148857
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18433.2 Da    PI: 11.3568
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000148857genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.5e-291059251
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   rien + rqvtfskRr g+lKKA+ELSvLCdaev++iifs++gkl+e++s
  MDP0000148857 10 RIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVSLIIFSPRGKLFEFAS 59
                   8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.936161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-39160IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-28361IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002657.65E-34360No hitNo description
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVRGKTQMRR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVSLIIFSP RGKLFEFASS  60
RKIFFITLKT SVRQKRTGQT ITDKVKDPSK MRAAKQDITG GPYKFRFEGC KNKQQKTLIS  120
NSKDHTTVXV TSSGEAKHGT KKVDTRSKSP SRTLANIYKV SYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18160160MEF2C
5f28_B4e-18160160MEF2C
5f28_C4e-18160160MEF2C
5f28_D4e-18160160MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231611e-96AB623161.2 Pyrus pyrifolia var. culta PpMADS5-1 mRNA for MADS-box protein, complete cds.
GenBankJF8066351e-96JF806635.1 Photinia serratifolia SOC1-like protein (SOC1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339460.12e-34MADS-box protein SOC1-like isoform X1
RefseqXP_027339461.12e-34MADS-box protein SOC1-like isoform X1
RefseqXP_027339466.11e-34MADS-box protein SOC1-like isoform X6
RefseqXP_027339469.12e-34MADS-box protein SOC1-like isoform X1
RefseqXP_027339470.12e-34MADS-box protein SOC1-like isoform X1
STRINGGLYMA18G45780.11e-33(Glycine max)
STRINGLus100141446e-34(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-35AGAMOUS-like 20