PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000148340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | CAMTA | ||||||||
Protein Properties | Length: 907aa MW: 102664 Da PI: 7.3106 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164.5 | 1.9e-51 | 27 | 142 | 3 | 118 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 + k+rwl+++ei+aiL n++ +++ l++ + pksg+++L++rk +r+frkDG++wkkkkdgktv+E+he+LKvg e +++yYah+e+ ptf rrc MDP0000148340 27 EAKSRWLRPNEIHAILYNYKYFTIXLKPVNSPKSGTIVLFDRKLLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGXEERVHVYYAHGEDSPTFVRRC 122 459********************************************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 ywlL+++le+ivlvhy+e++ MDP0000148340 123 YWLLDKSLEHIVLVHYRETQ 142 *****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.22 | 21 | 147 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.2E-72 | 25 | 142 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.2E-45 | 27 | 140 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 9.8E-12 | 359 | 446 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 3.74E-14 | 519 | 653 | No hit | No description |
SuperFamily | SSF48403 | 1.24E-16 | 520 | 655 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.7E-16 | 540 | 656 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.1E-7 | 556 | 623 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.671 | 561 | 626 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 12.155 | 594 | 626 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.8E-6 | 594 | 623 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 6.559 | 705 | 734 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.98 | 742 | 768 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 39 | 757 | 779 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.98 | 758 | 787 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.097 | 780 | 802 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.743 | 781 | 805 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0023 | 783 | 802 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 22 | 860 | 882 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.693 | 862 | 890 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 907 aa Download sequence Send to blast |
MENQLVGSEI HGFRTMQDLD VATTMEEAKS RWLRPNEIHA ILYNYKYFTI XLKPVNSPKS 60 GTIVLFDRKL LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG XEERVHVYYA HGEDSPTFVR 120 RCYWLLDKSL EHIVLVHYRE TQEVGSPVTP VNSNSSSXSD PSAPSFLSEE HDSVANNAYC 180 AGENELQELG DGLTVNNHEQ RLHDINTLEW DELLVKNDXE GDNISGYDQQ NQVVGNGSIS 240 GGASSLSAEI SSFGNLTNPT AGSENIQFNL SGTPYVETLV GDVNSNXQRR DYNAKADVLH 300 NNGLHSQDSF GRWINQIMTD SPASVEDPVL DSSFSAAQNS FASPTMNHLQ SSVPQQIFNI 360 TDISPTWAFS NEKTKILITG FLHQEFFQLA KSDLLCICGD VCLPAEIVQA GVYRXFVPPH 420 LPRVVNLFMS IDGHKPISQV LNFEYRAPVL SDTLVSSEGN KWEEFQAQMR LAYLLFSSSH 480 SLNIISSKVP PNALKEAKKF SHRTXHISNN WPYLMKVVED NKTPLXLAKD SLFELILKNR 540 LKDWLLEKVV QVSKTKEYDA HGQGVIHLCA ILEYTWAVRL FSWSGLSLDF RDRRGWTALH 600 WAAYCGREKM VAVLLSAGAN PNLVTDPTPD NPGGSTAADF AFMKGYDGLA AYLSEKALVE 660 QFKAMSVAGN VSGSLEISST YAANSENLSE EDLYLKDTLA AYRTTADAAA RIQAAFRENA 720 LKKKTKAVQY SIPEAEARGI IAALKIQHAF RNYETKKKIQ AAARIQYRFR TWKMRQEFLS 780 LRRQTIKIQA AFRGFQVRRQ YRKVLWSVGV LEKXVLRWRL KRRGLRGLNV APAXVSVDQD 840 QESDTEEDFY RASRKQAEER VERSVIRVQA MFRSKKAQEE YTRMKMAHNQ ATLEFDDFLD 900 PDAIMDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 83 | RKLLRNFRKDGHNWKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16540 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018505906.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5 isoform X2 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A498IFY7 | 0.0 | A0A498IFY7_MALDO; Uncharacterized protein | ||||
STRING | XP_009369951.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4288 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | MDP0000148340 |
Publications ? help Back to Top | |||
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