PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000147526

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 373aa MW: 42163.2 Da PI: 4.7026

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000147526	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.9	1.3e-25	285	335	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l+dl+ yF+lpi++AA+ L+vc+Tv+KriCR+ G++RWP+Rki+s+ MDP0000147526 285 TASMTLDDLRDYFHLPIEKAARRLKVCPTVVKRICRRSGLNRWPSRKIRSI 335 6899*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.019	275	355	IPR003035	RWP-RK domain
Pfam	PF02042	8.5E-23	287	335	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MADPRAVVPY HDPYDNGPCS DIVNFLYDSE HPILDESLPL PPLDDEGLAC PTKPIPLFDE 60 GIQDLSDPSL DQATWDFLYQ CSNGGGNFDS QAGPSQFIGE SSGSSPPRGD NNEQNQGFGD 120 PRPLSVWPAT PVPFNCSCCQ LLREIIHLNG NHVMKLDIHG RFGTISHAIL YSFDVNSSDN 180 HQYQMFDFCK KSIEEVKQFL MQYCLERKLE GYILQQDPMA VFYEALCIGL GWDDILNTDD 240 FTFPPSPPNS GRVREVEQQQ PAEDQSHAAE DENERISLAA QRERTASMTL DDLRDYFHLP 300 IEKAARRLKV CPTVVKRICR RSGLNRWPSR KIRSINRQIS RLRPSLDSDD ANTRVHAEAE 360 ISRLERKITA LVP

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MADPRAVVPY HDPYDNGPCS DIVNFLYDSE HPILDESLPL PPLDDEGLAC PTKPIPLFDE  60
GIQDLSDPSL DQATWDFLYQ CSNGGGNFDS QAGPSQFIGE SSGSSPPRGD NNEQNQGFGD  120
PRPLSVWPAT PVPFNCSCCQ LLREIIHLNG NHVMKLDIHG RFGTISHAIL YSFDVNSSDN  180
HQYQMFDFCK KSIEEVKQFL MQYCLERKLE GYILQQDPMA VFYEALCIGL GWDDILNTDD  240
FTFPPSPPNS GRVREVEQQQ PAEDQSHAAE DENERISLAA QRERTASMTL DDLRDYFHLP  300
IEKAARRLKV CPTVVKRICR RSGLNRWPSR KIRSINRQIS RLRPSLDSDD ANTRVHAEAE  360
ISRLERKITA LVP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016647903.1	0.0	PREDICTED: uncharacterized protein LOC107880544
TrEMBL	A0A498HVT1	0.0	A0A498HVT1_MALDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-15	NIN like protein 7

Link Out ? help Back to Top
Phytozome	MDP0000147526