PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000138052
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 443aa    MW: 47749.9 Da    PI: 6.5215
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000138052genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.65.5e-23299361163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    ++e krerrkq+NRe+ArrsR+RK+ae+eeL++ v++L+aeN aLk+e+++l++++a+lk e+
  MDP0000138052 299 DREMKRERRKQSNRESARRSRLRKQAETEELAQQVDVLSAENVALKSEINRLTENSATLKLEN 361
                    5899********************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.0E-33199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-26130264No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-16296358No hitNo description
SMARTSM003381.8E-21299363IPR004827Basic-leucine zipper domain
PfamPF001704.5E-21300361IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.898301364IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-12302358No hitNo description
CDDcd147022.90E-22304352No hitNo description
PROSITE patternPS000360306321IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGNDDDAKSA KSEKSSSPLP GDQTNHTNQT NMQVCPDWGA MQAYYGPRVA LPPYYNSAMA  60
SGHPPHPYMW GPPQHMMPPY GAPYAVYSHG GVYAHPAVPL ASHGQDVPSS PAAATPLNME  120
TPTKSSGNTE RGLMKKLKEF DGLAMSIGSG NVXNAEGGXE QSLSRSSKTE GSSDGSDGNT  180
AAAXQTRRKR SREGTPATAG DRKTDMQPGP VSAKEANAXT DKVLGVTIAA ASIPGKVVGP  240
AVSPGVTTVL ELNNPPILNS KTTPTCVPPS CAVLPPETWI DFCTTECNLW WLDYDXQNDR  300
EMKRERRKQS NRESARRSRL RKQAETEELA QQVDVLSAEN VALKSEINRL TENSATLKLE  360
NTTLLDKLKN ARAGRMEDII MNIDDKRVQP FSTENLLSRV NNAGSIARDA EKDGDNDMYE  420
KNNGAKLHQL LDASPRADAV AAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315321RRSRLRK
2315322RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028961559.10.0common plant regulatory factor 1 isoform X2
SwissprotQ990891e-141CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A498JFV90.0A0A498JFV9_MALDO; Uncharacterized protein
STRINGXP_008376053.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-121G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]