PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000119495
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 561aa    MW: 62989.6 Da    PI: 7.3452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000119495genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12375419554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h + Er+RR++iN++f++L++llP+      +K +Ka++L  A eY+ sL
  MDP0000119495 375 HMISERKRREKINESFHTLKSLLPPG-----TKKDKASVLISAREYLTSL 419
                    8899********************97.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-16372439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-11372423No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15374436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10375419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-13376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MDIAFQLDEG SRANFLRLVM QSFGCFYICL WSYMPPPSNF LFFLDGVYDE ENQPSSSSGS  60
LARQLFNEYR LSVFNVVEND CVPGFAFRNS VPYLELQEMD LQRLASVDTQ RQFYQEARIK  120
TAVFMGCKSG EIELGLSNVS QIDIKRELMR TWLPEAFSRQ LSPHTEVASR PINVQQNPPS  180
SSSSSLRSLS AIDSPEYSSL LFNIPTTTTS HNIPEIFTQL SSDPLRPINV NPLEPLPIIN  240
LIRTTSTSTS PHQQAIQAFS RTXNIQFPTP EIEDATMTRA ILAVLSSSPS SSSYQPPPHT  300
NPPSSSTAHR HLLTPKSSAF KTYSTSALAP RTQMSANLRR QNMHKXSISF LRSLNLMRLR  360
EGIQTTRPTS GQLHHMISER KRREKINESF HTLKSLLPPG TKKDKASVLI SAREYLTSLK  420
ARVDELSKRN QQLEARLLPP ANLGANEAAA TAGSSNERVS LTLTHVSSES SPDQDQQIID  480
LQVVLRSIES CTEDMVIRIL EFLKRVENVS LMSMEANTWI SEPNSNINRV ILRLRVDQGT  540
EWDEAAFXEA VRRVVADLAL I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378383ERKRRE
2379384RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344123.20.0putative transcription factor bHLH041
TrEMBLA0A498KL830.0A0A498KL83_MALDO; Uncharacterized protein
STRINGXP_008344123.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-51bHLH family protein