PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_9929143g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 268aa MW: 30725.6 Da PI: 7.1199

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_9929143g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	161.8	1e-50	76	180	2	102
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 +++fw++q ie+a df+nh+lPlarikki+k+d e+v+misaeaPv+++kace+fi eltlr+w+h+eenkrrtl+k+diaaa++rtdifdf MA_9929143g0010 76 IEVFWANQmqeIEQAVDFRNHSLPLARIKKIMKSDdENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDF 169 579*99778899***************96267**************************************************** PP NF-YC 92 lvdivprdelk 102 l+divprdelk MA_9929143g0010 170 LIDIVPRDELK 180 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.99E-33	40	170	IPR009072	Histone-fold
Pfam	PF00808	1.4E-22	97	161	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.6E-37	98	176	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MEEHSAMQHM PMHYRAMPYA NAQIQPNIAA HGAFQQPPIH AHHHALSSHH NQLPYQHQQQ 60 IHQHQRQLHH QQQQHIEVFW ANQMQEIEQA VDFRNHSLPL ARIKKIMKSD DENVRMISAE 120 APVVFAKACE MFINELTLRA WIHTEENKRR TLQKNDIAAA IARTDIFDFL IDIVPRDELK 180 EDQVINLGNP RSALSVGSSS TNAAAGANSF PYYYLPNQHS VPHGVFVGKP MDPTIYMQQP 240 QSPVAYMPNI WQWGHMQADQ SKSPNPGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-51	82	176	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF084647	0.0	EF084647.1 Picea sitchensis clone WS02719_H11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018847918.1	5e-74	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_028062742.1	4e-74	nuclear transcription factor Y subunit C-2
Refseq	XP_028062744.1	4e-74	nuclear transcription factor Y subunit C-2
Swissprot	Q9FMV5	1e-64	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A9NTJ8	0.0	A9NTJ8_PICSI; Uncharacterized protein
STRING	XP_008346078.1	1e-73	(Malus domestica)
STRING	XP_008356118.1	1e-73	(Malus domestica)
STRING	XP_008372003.1	1e-73	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-63	nuclear factor Y, subunit C2

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]