PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

MA_795128g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 382aa MW: 42929.1 Da PI: 6.681

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_795128g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6.1e-06	219	238	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C Cgk+F+r n++ H+ MA_795128g0010 219 FSCAVCGKTFNRYNNMQMHM 238 89*****************9 PP
2	zf-C2H2	12	0.00064	303	325	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ MA_795128g0010 303 FACRKCSKAFAVRGDWRTHEKNC 325 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-5	212	241	No hit	No description
PROSITE profile	PS50157	10.887	219	246	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.22	219	241	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.9E-5	219	238	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	221	241	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.23E-5	289	323	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	290	323	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	78	303	323	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MQRKRPLEME MMMKSRSYQY SQSSMAVPPS ISFHRLPLGE WINPQFVMDP SVSQLPSGIP 60 FIYDHGIVSL NNQPESVNSP LQCLPCHHPA VSMIPRTYSA AVDEELKDHE EEEEEEPFLS 120 LRPPGQTEAA IKNNSTSSSS HPSSYITDQD DSDDNVTVAL RIGLPNSELR ECRSEGAGEY 180 NDAVSMSPDD GCFQTGEKLA EGQYWIPTPA QILVGPTQFS CAVCGKTFNR YNNMQMHMWG 240 HGSQYRKGPD SLRGTKPSAI LRLPCYCCAP GCRNNIHHPR SKPLKDFRTL QTHYKRKHGM 300 KPFACRKCSK AFAVRGDWRT HEKNCGKLWF CTCGSDFKHK RSLKDHIRAF GNGHAPHGVE 360 TCEDDDDTPS EEVDDDYSGG SH

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MQRKRPLEME MMMKSRSYQY SQSSMAVPPS ISFHRLPLGE WINPQFVMDP SVSQLPSGIP  60
FIYDHGIVSL NNQPESVNSP LQCLPCHHPA VSMIPRTYSA AVDEELKDHE EEEEEEPFLS  120
LRPPGQTEAA IKNNSTSSSS HPSSYITDQD DSDDNVTVAL RIGLPNSELR ECRSEGAGEY  180
NDAVSMSPDD GCFQTGEKLA EGQYWIPTPA QILVGPTQFS CAVCGKTFNR YNNMQMHMWG  240
HGSQYRKGPD SLRGTKPSAI LRLPCYCCAP GCRNNIHHPR SKPLKDFRTL QTHYKRKHGM  300
KPFACRKCSK AFAVRGDWRT HEKNCGKLWF CTCGSDFKHK RSLKDHIRAF GNGHAPHGVE  360
TCEDDDDTPS EEVDDDYSGG SH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024385058.1	1e-130	zinc finger protein WIP6-like
Refseq	XP_024385059.1	1e-130	zinc finger protein WIP6-like
Swissprot	Q9SVY1	1e-111	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2K1K471	1e-129	A0A2K1K471_PHYPA; Uncharacterized protein
STRING	PP1S203_59V6.1	1e-130	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]