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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_71756g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 25769.9 Da PI: 8.2082 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.6 | 3.8e-12 | 83 | 109 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y+++ C+++++tG Ck+G +Ck++H++ MA_71756g0010 83 YGQPDCQYYMKTGDCKFGTTCKYHHPK 109 899**********************96 PP | |||||||
2 | zf-CCCH | 37.1 | 5.2e-12 | 131 | 154 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C f++r+G+Ck+G+ CkF H+ MA_71756g0010 131 QPACTFYSRYGICKFGPACKFDHP 154 789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.441 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 82 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-9 | 83 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 88 | 109 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-6 | 129 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 131 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 131 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MRVGFDPLMC AQGPLSPLLS PERHQQPLGT GIAYKSFQHS DSSASGVQSA VTPLVQVGSA 60 AMVLPTVQAQ PSVGQKESFP ERYGQPDCQY YMKTGDCKFG TTCKYHHPKE RVAQSPTCVL 120 SPIGLPLRSD QPACTFYSRY GICKFGPACK FDHPLAGVSY SPSSSSLSEQ PVAPYPRGSS 180 PTRMLVRSSS SENSQAALMV KGQSSRSEES ASFKHHSTTD GPVGVKETDT SNSVAAVLSE 240 SA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373414.1 | 2e-55 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373415.1 | 2e-55 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373416.1 | 2e-55 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373417.1 | 8e-56 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q84W91 | 7e-43 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0D6R411 | 1e-91 | A0A0D6R411_ARACU; Uncharacterized protein | ||||
STRING | PP1S102_155V6.1 | 6e-55 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP13753 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 4e-40 | C3H family protein |