PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_4704g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 496aa MW: 55293.3 Da PI: 7.1792 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 128 | 173 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gR++k+c++rw++ MA_4704g0010 128 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 173 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.1e-17 | 180 | 223 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++e++e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ MA_4704g0010 180 RRPFSEEDEEKLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 223 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.14 | 123 | 174 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 127 | 176 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 128 | 173 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.24E-28 | 128 | 221 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-26 | 129 | 181 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.44E-13 | 131 | 172 | No hit | No description |
PROSITE profile | PS51294 | 25.682 | 175 | 229 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-15 | 179 | 227 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 180 | 222 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-20 | 182 | 228 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.39E-12 | 182 | 222 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MCHTQKDGPS RNWIRPENRL NNPMMQNTRI SAESRQFLVV GSSGFMQPGV ESESGNEEAM 60 LMNNTTTNAT AVTPCDPKSW TIQMGSMESS SGHHSAKVSS DNNMGNLGDS NEEVENSVDG 120 VQSRLCARGH WRPAEDAKLK ELVSQYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR 180 RPFSEEDEEK LLAAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARRYR EQSSAFGRRK 240 LTQVHRREKR VCTEDETGTA SSNMWVDKFS SFKSSHDVIL RRGSVCKSQI PGENASCVSV 300 FGAPRVDDDE RCGNFDRLQQ RIGAASIAPP HHHQQRSYIS SLDAVQSRIF FEGSREMKIN 360 NNYNKAVDML GSNVDNYHIL VSQMEGESSS PSQLTTDSCA AVSLLQGAFA SSKRSSVVNT 420 NFSLGHQQNV VQYGYSDSSA SDQLSAVEAS YADNSSTTGN NNYLMATRSL VFEEEAEIEF 480 KKPNGGFIDF LGVGTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 128 | 228 | 7 | 107 | B-MYB |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110903 | 0.0 | BT110903.1 Picea glauca clone GQ03229_J07 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A222UAB3 | 0.0 | A0A222UAB3_GINBI; R2R3MYB12 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 1e-70 | myb domain protein 117 |