PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ERF

Protein Properties

Length: 212aa MW: 23106.7 Da PI: 8.4855

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_42369g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.8	1.6e-19	131	183	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GVr+++ +g++ AeIrdp + k +r++lg+f taeeAa a+++a+ +++g+ MA_42369g0010 131 SHYRGVRRRP-WGKFSAEIRDPAK--KGARVWLGTFNTAEEAALAYDRAAFRIRGA 183 79******.******954..34***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.41E-30	131	190	No hit	No description
SuperFamily	SSF54171	2.03E-23	131	191	IPR016177	DNA-binding domain
Pfam	PF00847	4.0E-14	131	182	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.2E-31	132	190	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.408	132	190	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-35	132	196	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-11	133	144	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-11	156	172	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MDVAGGVSNN KNMKMLNMLE LIRHHLLDVE DEIDIVDLQG GNQVLASGSR LTSDGNKFAE 60 AQGGNQESSS SSSTVLACGS RLTSDDDEFA VAQDYSSSPV STVIRREEAL KVKQQAHDEE 120 NGEIKQISRA SHYRGVRRRP WGKFSAEIRD PAKKGARVWL GTFNTAEEAA LAYDRAAFRI 180 RGARALVNFP LAFASISENG SAAGHTGQKR KR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-33	128	191	1	64	ATERF1
3gcc_A	2e-33	128	191	1	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF082403	1e-152	EF082403.1 Picea sitchensis clone WS0282_K22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	O80338	1e-32	EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBL	A9NMA3	1e-102	A9NMA3_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47220.1	5e-26	ethylene responsive element binding factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]