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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_37766g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 509aa MW: 56183.5 Da PI: 5.4238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.5e-19 | 110 | 158 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAaka++a +kk++g MA_37766g0010 110 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAKAYDAEAKKIRG 158 9*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.393 | 109 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 109 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 109 | 166 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-12 | 110 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-32 | 110 | 168 | No hit | No description |
PRINTS | PR00367 | 3.2E-11 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MCGGAIISDF IPANRSRRIT ARDLWPDFDT FAESFINGRA VSESFNKSGS FDEGFVDFDE 60 GYKQKIKPSK NIFNSKQKFS SGDENEAIPP WKDFEKSAAK SAGRKRTNLY RGIRQRPWGK 120 WAAEIRDPRK GVRVWLGTFN TAEEAAKAYD AEAKKIRGKK AKLNFANDSC SVKMDSSKKM 180 PRKKVKLCTK NPDLLLSSNI NGKVKSSNSP KPDLLEGYYI NTQMEPSLKD VCRSDLPIYG 240 YNDMEYGDSK FIKPSAPFRS NSNASTAQSS EHSNLSQTLQ KSCSCEICSH NNSEVSNFMS 300 TLYGDASIFE PVKSSHPGGY FDSDHSSISF DRAHFPWAHE TKTPEISSVY DDRNESVFVD 360 IKPPVHGVVK DGPVDTSINV DGGTESFVVE TSIEVNDGTE CFVMDTPVEV KGGTECYKTE 420 DNIGQLEFSK ELSALESYLG LSESPNLKAT IDGSIEVAGH AAGSFPDDEC SLKPWIYDDL 480 PISGSVYQSS LGYLPISGSV YQNSLGSCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 110 | 165 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107056 | 0.0 | BT107056.1 Picea glauca clone GQ03102_D15 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-31 | related to AP2 12 |