PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_33318g0010
Common NameWOX3
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 167aa    MW: 19215.7 Da    PI: 8.3301
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_33318g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.73.1e-212786357
                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  MA_33318g0010 27 TRWNPTPEQLMILEEMYRGgIRTPNADQIQQITAHLalygKIEGKNVFYWFQNHKARDRQ 86
                   8*****************99*************************************996 PP
2Wus_type_Homeobox121.34.1e-392587264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+PtpeQ++iLee+y+ G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
      MA_33318g0010 25 ATTRWNPTPEQLMILEEMYRGGIRTPNADQIQQITAHLALYGKIEGKNVFYWFQNHKARDRQK 87
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.2522287IPR001356Homeobox domain
SMARTSM003897.2E-62491IPR001356Homeobox domain
SuperFamilySSF466893.21E-112491IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-82786IPR009057Homeodomain-like
CDDcd000861.22E-42787No hitNo description
PfamPF000466.9E-192786IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MNDIKGSGVV SRARIRVPTA MPQPATTRWN PTPEQLMILE EMYRGGIRTP NADQIQQITA  60
HLALYGKIEG KNVFYWFQNH KARDRQKLRR KMESKQEPKR STFEDESALD INNGWRLSTL  120
DSRDECGNSF NCGSVEEFDC EIDTVHEISR RARPLKTLEL FPTCSGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691KLRRKM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8821580.0FM882158.1 Pinus sylvestris mRNA for putative wuschel homeobox protein WOX3 (wox3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828230.12e-42WUSCHEL-related homeobox 3
RefseqXP_008783634.13e-42WUSCHEL-related homeobox 3B-like
TrEMBLR9R8B41e-117R9R8B4_PICAB; WUSCHEL homeobox protein WOX3
STRINGAquca_046_00011.11e-42(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP55801121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.16e-41WOX family protein
Publications ? help Back to Top
  1. Hedman H,Zhu T,von Arnold S,Sohlberg JJ
    Analysis of the WUSCHEL-RELATED HOMEOBOX gene family in the conifer picea abies reveals extensive conservation as well as dynamic patterns.
    BMC Plant Biol., 2013. 13: p. 89
    [PMID:23758772]