PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_19523g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YC | ||||||||
Protein Properties | Length: 249aa MW: 27728.4 Da PI: 8.4688 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 158.8 | 8.4e-50 | 63 | 163 | 5 | 102 |
NF-YC 5 fwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 w++q ie+a df+nh+lPlarikki+k+de+vkmisaeaPv+++kace+fi eltlr+w+h+ee+krrtl+k+diaaa+trtdifdfl+di p MA_19523g0010 63 SWANQmqgIEQAVDFRNHSLPLARIKKIMKSDEHVKMISAEAPVVFAKACEMFINELTLRAWNHTEETKRRTLQKNDIAAAITRTDIFDFLIDILP 158 6998877789************************************************************************************** PP NF-YC 98 rdelk 102 rdelk MA_19523g0010 159 RDELK 163 **875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.54E-31 | 65 | 153 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-22 | 81 | 144 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.7E-37 | 82 | 159 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MPIQYYGATP YQTAQILPSI AHGTFQQPLI SSNAHAAPAL PLSAHLNQLA YHHQKHQGKV 60 EISWANQMQG IEQAVDFRNH SLPLARIKKI MKSDEHVKMI SAEAPVVFAK ACEMFINELT 120 LRAWNHTEET KRRTLQKNDI AAAITRTDIF DFLIDILPRD ELKEDQVITL GTPSSSLSVG 180 GSSSNAGVAN SFPYYYLPNQ HSAPHGVTVG NPMHPAIYMQ QPRSPAAYMQ NMLQRGHMHT 240 DQSRSHNSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-53 | 67 | 159 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 137 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022075.1 | 7e-74 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_011022077.1 | 7e-74 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_021639808.1 | 9e-74 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_021639809.1 | 9e-74 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_021639810.1 | 9e-74 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_021639811.1 | 9e-74 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9ZVL3 | 1e-61 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A9NTJ8 | 1e-113 | A9NTJ8_PICSI; Uncharacterized protein | ||||
STRING | POPTR_0005s09770.1 | 3e-72 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-59 | nuclear factor Y, subunit C2 |