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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_121578g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | AP2 | ||||||||
Protein Properties | Length: 635aa MW: 70501.4 Da PI: 6.2873 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.1 | 6.1e-15 | 255 | 314 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aak ++ a++k++g MA_121578g0010 255 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDKEEKAAKSYDLAALKYWG 314 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 359 | 408 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g MA_121578g0010 359 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 408 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-15 | 255 | 324 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.1E-11 | 255 | 314 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.76E-20 | 255 | 322 | No hit | No description |
SMART | SM00380 | 1.9E-28 | 256 | 328 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-14 | 256 | 323 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.742 | 256 | 322 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 257 | 268 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.75E-25 | 357 | 418 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 357 | 418 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.23 | 358 | 416 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-34 | 358 | 422 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 358 | 416 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-9 | 359 | 408 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 398 | 418 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MNNWLAFSLS PHLAIDVSAS ADQSAQPQQL SSVPSSFNCL QASQMPRSTL TYQSYGVNSE 60 NGGNSFYAPM PLKSDGSFCI MEAIGRSQIE DWHDLKPPVL QAGRVQSPNV MGSRLSSSDS 120 QYEMAPNGTS DNGSPKLEDF LGGASLGSHE YSTSARDHQS MSLSLQESMY FDHNNSTNES 180 HESLNNIGDL QSQALTLTMS PGSQSSSVTI VPHSGTNAEC VAVETSRKRA AGSKSGITRQ 240 PVPRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV YLGGYDKEEK 300 AAKSYDLAAL KYWGPSTHIN FPLNTYEKEL EEMKHMTRQE YVANLRRKSS GFSRGASMYR 360 GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTN AVTNFDISRY 420 DVKRILASNT LLVGESARLN RDQLAEPLTA EPDQADVPIV IHQIANEKYN AKETDYEDED 480 TKNNWQMQVQ DQDQNQINSC SNEPSDHDKI WDDQKPSQSF TESQHLAALH NLMGLDHAST 540 TERNGESSNN NNNNPLLRDI SASPRSPGAS IGREEHEEEA AMSPNAQNEN GLFFSSKQPA 600 LQINNALSSW MTQAARPAIN SMAHHIPMFA SWNDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT100555 | 0.0 | BT100555.1 Picea glauca clone GQ0025_E20 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019437878.1 | 1e-164 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-136 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | B9T5Q9 | 1e-159 | B9T5Q9_RICCO; Uncharacterized protein | ||||
STRING | XP_002533578.1 | 1e-160 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-133 | AP2 family protein |