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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_118174g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | G2-like | ||||||||
Protein Properties | Length: 319aa MW: 34734.3 Da PI: 7.2521 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.6 | 6.7e-34 | 246 | 300 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHe+Fvea+++LGG+e+AtPk +l+lm+v+gLt++hvkSHLQkYR+ MA_118174g0010 246 KPRLRWTPELHENFVEAINKLGGAERATPKGVLKLMNVEGLTIYHVKSHLQKYRI 300 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-32 | 243 | 301 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.455 | 243 | 303 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-18 | 244 | 300 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-25 | 246 | 301 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-10 | 248 | 299 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGTPHAFRAA PAPDTEHSWN ACFIENNVPP SQHILPQVLS PDSRQANSFR TVSPVSSVSN 60 AGIGHGHMYS SASSFCTSLH HSSSAGSQRQ NQLNGLPFLP QPSKTLLPGS AVRSSQSGLS 120 YSSEGRNLRC QEAGTEHPLQ ELFNFSEELS EYSQRSQEKP ANARNVGQEQ SKQSDWPLWT 180 EHLVSDDLSD LLVGDPCINT AYQTAKSSAT ESTSHQLQSH QQFLPPSGGI HLPANSPASG 240 AGASNKPRLR WTPELHENFV EAINKLGGAE RATPKGVLKL MNVEGLTIYH VKSHLQKYRI 300 AKYISDYTDG KSNFSNSFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-28 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-28 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-28 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-28 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-28 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-28 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-28 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-28 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF085801 | 0.0 | EF085801.1 Picea sitchensis clone WS02727_L10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LPK9 | 0.0 | B8LPK9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 6e-29 | phosphate starvation response 1 |