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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10430070g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | B3 | ||||||||
Protein Properties | Length: 368aa MW: 41406.6 Da PI: 8.4689 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.4 | 1.6e-15 | 9 | 86 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l++p f++ ++ +k+ le +sg++W v++ +++++ + +++ W+ Fv+++ L++gDf+vFk++g+s f v++f + MA_10430070g0010 9 LRIPPAFVRLLRYQV--HKDAFLEGPSGQVWLVTVHFTNTG--MAFEQSWQTFVSDHSLDVGDFLVFKYVGKSHF--IVQIFGR 86 789999998887774..458***************877777..55999***********************9999..9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.07 | 1 | 87 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-10 | 5 | 87 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 7 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-20 | 7 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.88E-16 | 9 | 84 | No hit | No description |
Pfam | PF02362 | 2.5E-13 | 9 | 86 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MLGDFRTVLR IPPAFVRLLR YQVHKDAFLE GPSGQVWLVT VHFTNTGMAF EQSWQTFVSD 60 HSLDVGDFLV FKYVGKSHFI VQIFGRSGCE KRDAFNVRKS RAYCMNDGTE KWQDSRRGNT 120 NVENFCSPLD KTGIDLAHND KSNEDDEVQV LETAPNTNFM GENSMQTNST RKKARISSGY 180 KPDTLCNYRN SKDAVGTKEN IVKLGSSTTN YLEGEKEAGF PKSQPIVIDS EEESIQQTWT 240 ADGSKMSVAE AVSSPTCAVN FDKPLCHAVQ LVKDTKIGKQ THHTPKDAGK NYVSTHYVSC 300 RRPVTQAERK KTLQAAQSFK SSKPFSLLTM KQSQVYQGFW LVSTIPLNFL PYCHVPFTKH 360 GEICTDTH |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116787 | 0.0 | BT116787.1 Picea glauca clone GQ03806_L20 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8972 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-16 | B3 family protein |