PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10426320g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 501aa MW: 55847.4 Da PI: 10.2862 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.6e-09 | 134 | 179 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h + ErrRR++++++fe Lr+l P + + +Ka+iL + eY+ sL MA_10426320g0010 134 HHIISERRRREKLKEKFEALRSLFPRiS------RKDKASILAYTREYLTSL 179 58999*********************66......899***********9998 PP | |||||||
2 | HLH | 19.6 | 1.7e-06 | 473 | 497 | 4 | 28 |
HHHHHHHHHHHHHHHHHHHHHCTSC CS HLH 4 ahnerErrRRdriNsafeeLrellP 28 h + ErrRR++++++fe Lr+l P MA_10426320g0010 473 HHIISERRRREKLKEKFEALRSLFP 497 7999******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.32E-9 | 129 | 180 | No hit | No description |
PROSITE profile | PS50888 | 14.284 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-15 | 132 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-11 | 133 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-6 | 135 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-8 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 7.1E-4 | 178 | 202 | No hit | No description |
CDD | cd00083 | 7.47E-5 | 468 | 497 | No hit | No description |
PROSITE profile | PS50888 | 10.398 | 469 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-6 | 469 | 500 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-6 | 473 | 499 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MSASEAASGF YPYQQTLQLP SSLGLLISRH DHETALDYPG SSSQISVPDL LLFQKMSQAS 60 GFPFPSSANN MILSAFGMWR PPSKVPTAPV VEGQYRLKRC LAILRNIHAE RLRQISISGN 120 HRAPGGTVSS SQLHHIISER RRREKLKEKF EALRSLFPRI SRKDKASILA YTREYLTSLK 180 SRGEELEKRN KQLESELKKL PQAQSQGGAG TSTALQQQGS TGTEGGDSVV TVEVSKIGGS 240 TNATTCDEMG IVVVVDRPRN TIDLMTALLK RLREMGVALI STTISTVHHE HDQSRLQLRM 300 TATIKMQDHE VDRVKEWLLS AVERDXDQIN IPSDMHQYSM SASEAASGFY PYQQTLQLPS 360 SSGLLISRHD HETALDYPGS SSQISVPDLL LFQQMSQVSG FPFPSSANNM MLSAFGMWRP 420 PSKVPTPPVV EGQYRLKRCI AILRTIHAER LRQISMSGSH RATGGTVSSS QVHHIISERR 480 RREKLKEKFE ALRSLFPRIS R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 477 | 482 | ERRRRE |
2 | 478 | 483 | RRRREK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 7e-09 | bHLH family protein |