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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10260690g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 117aa MW: 13273.7 Da PI: 4.3319 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.9e-09 | 70 | 107 | 3 | 42 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 ++++E++l+ ++ ++lG + W++Ia +++ gRt +++ MA_10260690g0010 70 GFSEDEEDLISRLYNLLGQR-WALIAGRIP-GRTTEEIEK 107 69*****************9.*********.****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.7E-5 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-8 | 69 | 108 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.47E-6 | 70 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 71 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.08E-7 | 71 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MEHPAPIMAH KLNEVESKIR TVLPAGIGGF FFNSHFLNSQ GTMSDTDCLS SEDNVSMDSP 60 DDVNEDYKMG FSEDEEDLIS RLYNLLGQRW ALIAGRIPGR TTEEIEKYCS RRYGSEY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT103333 | 1e-156 | BT103333.1 Picea glauca clone GQ0228_A02 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012086360.1 | 1e-24 | MYB-like transcription factor ETC1 | ||||
TrEMBL | B8LRL3 | 1e-35 | B8LRL3_PICSI; Uncharacterized protein | ||||
STRING | XP_002529738.1 | 2e-23 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3921 | 8 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 7e-17 | MYB_related family protein |