PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042007
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 439aa    MW: 48493.4 Da    PI: 7.1297
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.39.5e-22115174357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Lus10042007 115 SRWNPTPEQLRTLEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 174
                  8*****************99**************************************97 PP
2Wus_type_Homeobox115.62.3e-37113176265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
        Lus10042007 113 SSSRWNPTPEQLRTLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 176
                        579***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.2E-6112179IPR001356Homeobox domain
SuperFamilySSF466892.87E-12115180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-9115174IPR009057Homeodomain-like
PfamPF000462.1E-19115174IPR001356Homeobox domain
CDDcd000863.38E-7116176No hitNo description
PROSITE profilePS5007111.013120175IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MWMMGYNDAG NGYAVPHDHY QFNNGSRKLR PLIPRSFLSS TPTTATAAAS ILVPGSVTAN  60
SDHHHLSAFN HHNHHLGSTT TAEQSKRDNI NNNIDTYELN QLQGVGGAGV VVSSSRWNPT  120
PEQLRTLEEL YRRGTRTPSA DQIQHITAQL RRYGKIEGKN VFYWFQNHKA RERQKRRRQM  180
DSSTSSPDIV HLRCPGEPVN GTSYEAGDQQ QQQQQLQNNK SWGAMNCTAS EEAIPIPSCT  240
RGGEEEALVV LHEEGRRNNF MEERNATWQH MIQLSCPPPL TPTTTTPTTT ITTSSANIHH  300
DASNITTPTS PPPSSTTAAT STVKLMVNKA SGQHHHLNIF TSQYGLVAIN PTSYHQQQIY  360
LPPPPPTTIK EPADGTLELF PLGRSGGNDA GSKKDTQDHG DIDDDVNKFI MATSTADNNH  420
PSNNNSSFQF FEFLPLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100420070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-44WUSCHEL related homeobox 1