PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041721
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 554aa    MW: 61428.7 Da    PI: 6.0567
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041721genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.31.3e-891815522374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  v+ L+++A++++s++++la+a+L+rl+ +  ++g+p++R+a +f+eAL++ l+      +   p+  +++++++e++ a+++fs +sPi+ f+h+taN
  Lus10041721 181 VQELIRAADCFDSNQFQLAHAILERLNSRLPSSGKPLHRAAIFFKEALQSLLTV-----STRPPAYLSTWSETVETIRAYRAFSGISPIPMFAHFTAN 273
                  689*************************************************98.....55567777788889************************* PP

         GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp..eg.......ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                  qa+l++++g     +H++Dfdi+ G Q+++++++La+R   eg       ++ lR+T+v+ +e   + e++ ++e L++fA+el+++f++++++ +++
  Lus10041721 274 QALLDSLDGPssPFIHVVDFDIGLGCQYASFMRELAERGsvEGgyvckfgAAILRVTAVVTEE--YAIETKLIRESLTQFADELKLRFQIEFVLLRTF 369
                  ********987789************************97722566667699*********66..99999**************************** PP

         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres.e 280
                  e+l+++++++ +gE++aV l+  ++r l    sl+s  +++++ ++++sP vvv+v+ e   + +++sF + f++ le+ys +f+sl   +++  s +
  Lus10041721 370 EMLSFKSIKFVEGEKTAVLLSPFIFRRL----SLTSGVTAFISDLRRMSPSVVVFVDGEawGESGTSSFRRNFVNNLEFYSIMFESLdGGGAAMGSgD 463
                  ***************************9....77777889*******************6557799*********************66677777789 PP

         GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + +k+E  l++++i  +v   g+        l  W+e +  aG+ p+  s++a  qa++ll kv+s+g+ v +++++lvl+W+drpLv++SaWr
  Lus10041721 464 WVRKIEMLLMRPRILAAVEGCGRG-----AALPPWKEVFAGAGMWPIGWSQFADFQAETLLGKVQSRGFYVAKRQAELVLCWHDRPLVATSAWR 552
                  99**************99888877.....99**************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.676154532IPR005202Transcription factor GRAS
PfamPF035144.5E-87181552IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MKVPLPVSSC KSNLLNSDPL IPTPPRTTTT TNNNLSLAPS ICYEPTSVLE LGRTPTSPVT  60
TKPPAADPID WDDHVLENFN WDSIMKELDF HDHNNNNTNN PIKPTNLINL PHFDTPSAGD  120
HHHVFGSSLP GLDQSTQFVH HPDYADVFLN SIPNTHDFST SELSHHSFPN SNSNLPGFDS  180
VQELIRAADC FDSNQFQLAH AILERLNSRL PSSGKPLHRA AIFFKEALQS LLTVSTRPPA  240
YLSTWSETVE TIRAYRAFSG ISPIPMFAHF TANQALLDSL DGPSSPFIHV VDFDIGLGCQ  300
YASFMRELAE RGSVEGGYVC KFGAAILRVT AVVTEEYAIE TKLIRESLTQ FADELKLRFQ  360
IEFVLLRTFE MLSFKSIKFV EGEKTAVLLS PFIFRRLSLT SGVTAFISDL RRMSPSVVVF  420
VDGEAWGESG TSSFRRNFVN NLEFYSIMFE SLDGGGAAMG SGDWVRKIEM LLMRPRILAA  480
VEGCGRGAAL PPWKEVFAGA GMWPIGWSQF ADFQAETLLG KVQSRGFYVA KRQAELVLCW  540
HDRPLVATSA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-2518655125378Protein SCARECROW
5b3h_A8e-2518655124377Protein SCARECROW
5b3h_D8e-2518655124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041721
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310797.10.0scarecrow-like protein 15
SwissprotO232101e-155SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1R3INZ30.0A0A1R3INZ3_9ROSI; Transcription factor GRAS
STRINGLus100417210.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-156GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]