PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 554aa MW: 61428.7 Da PI: 6.0567 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 292.3 | 1.3e-89 | 181 | 552 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 v+ L+++A++++s++++la+a+L+rl+ + ++g+p++R+a +f+eAL++ l+ + p+ +++++++e++ a+++fs +sPi+ f+h+taN Lus10041721 181 VQELIRAADCFDSNQFQLAHAILERLNSRLPSSGKPLHRAAIFFKEALQSLLTV-----STRPPAYLSTWSETVETIRAYRAFSGISPIPMFAHFTAN 273 689*************************************************98.....55567777788889************************* PP GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp..eg.......ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 qa+l++++g +H++Dfdi+ G Q+++++++La+R eg ++ lR+T+v+ +e + e++ ++e L++fA+el+++f++++++ +++ Lus10041721 274 QALLDSLDGPssPFIHVVDFDIGLGCQYASFMRELAERGsvEGgyvckfgAAILRVTAVVTEE--YAIETKLIRESLTQFADELKLRFQIEFVLLRTF 369 ********987789************************97722566667699*********66..99999**************************** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres.e 280 e+l+++++++ +gE++aV l+ ++r l sl+s +++++ ++++sP vvv+v+ e + +++sF + f++ le+ys +f+sl +++ s + Lus10041721 370 EMLSFKSIKFVEGEKTAVLLSPFIFRRL----SLTSGVTAFISDLRRMSPSVVVFVDGEawGESGTSSFRRNFVNNLEFYSIMFESLdGGGAAMGSgD 463 ***************************9....77777889*******************6557799*********************66677777789 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +k+E l++++i +v g+ l W+e + aG+ p+ s++a qa++ll kv+s+g+ v +++++lvl+W+drpLv++SaWr Lus10041721 464 WVRKIEMLLMRPRILAAVEGCGRG-----AALPPWKEVFAGAGMWPIGWSQFADFQAETLLGKVQSRGFYVAKRQAELVLCWHDRPLVATSAWR 552 99**************99888877.....99**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.676 | 154 | 532 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-87 | 181 | 552 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MKVPLPVSSC KSNLLNSDPL IPTPPRTTTT TNNNLSLAPS ICYEPTSVLE LGRTPTSPVT 60 TKPPAADPID WDDHVLENFN WDSIMKELDF HDHNNNNTNN PIKPTNLINL PHFDTPSAGD 120 HHHVFGSSLP GLDQSTQFVH HPDYADVFLN SIPNTHDFST SELSHHSFPN SNSNLPGFDS 180 VQELIRAADC FDSNQFQLAH AILERLNSRL PSSGKPLHRA AIFFKEALQS LLTVSTRPPA 240 YLSTWSETVE TIRAYRAFSG ISPIPMFAHF TANQALLDSL DGPSSPFIHV VDFDIGLGCQ 300 YASFMRELAE RGSVEGGYVC KFGAAILRVT AVVTEEYAIE TKLIRESLTQ FADELKLRFQ 360 IEFVLLRTFE MLSFKSIKFV EGEKTAVLLS PFIFRRLSLT SGVTAFISDL RRMSPSVVVF 420 VDGEAWGESG TSSFRRNFVN NLEFYSIMFE SLDGGGAAMG SGDWVRKIEM LLMRPRILAA 480 VEGCGRGAAL PPWKEVFAGA GMWPIGWSQF ADFQAETLLG KVQSRGFYVA KRQAELVLCW 540 HDRPLVATSA WRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-25 | 186 | 551 | 25 | 378 | Protein SCARECROW |
5b3h_A | 8e-25 | 186 | 551 | 24 | 377 | Protein SCARECROW |
5b3h_D | 8e-25 | 186 | 551 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041721 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310797.1 | 0.0 | scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-155 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A1R3INZ3 | 0.0 | A0A1R3INZ3_9ROSI; Transcription factor GRAS | ||||
STRING | Lus10041721 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5959 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-156 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10041721 |
Publications ? help Back to Top | |||
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