PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040447

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WOX

Protein Properties

Length: 235aa MW: 25942.5 Da PI: 5.8801

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040447	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	109	169	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ n +p++++++e++++l +++e++V++WFqNrRa+ k+ Lus10040447 109 RQRWTPTPVQLQILEQIFEQgNGTPTKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 169 89***************99************************************97 PP
2	Wus_type_Homeobox	102.2	3.7e-33	109	171	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Lus10040447 109 RQRWTPTPVQLQILEQIFEQGNGTPTKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRKQ 171 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.31E-20	103	174	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-18	105	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.175	105	170	IPR001356	Homeobox domain
SMART	SM00389	6.9E-15	107	174	IPR001356	Homeobox domain
Pfam	PF00046	2.4E-19	109	169	IPR001356	Homeobox domain
CDD	cd00086	1.91E-14	109	171	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEWDSAVVGA NHKRHHESCN NNNNGDPNTA NSSSSPNDLL YVKVMTDEQL ETLRKQIAVY 60 STICEQLVEM HKTLSSSSHQ DFAAAGRLGN MYLDTLMGGG GGQKMSGGRQ RWTPTPVQLQ 120 ILEQIFEQGN GTPTKQKIKE ITTELSQHGQ ISETNVYNWF QNRRARSKRK QHLTNLPTSA 180 TAGTNNNDNA GATSGDLSSE VETTTATEVD SLNDQDIIIQ LLAQSQYQEK QCWN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	170	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040447

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425279.1	5e-74	WUSCHEL-related homeobox 13 isoform X1
Swissprot	Q5QMM3	4e-64	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A067G7G2	1e-73	A0A067G7G2_CITSI; Uncharacterized protein
STRING	Lus10040447	1e-175	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-59	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Lus10040447

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]