PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Lus10040425

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 182aa MW: 19592.9 Da PI: 10.1796

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040425	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F++ L H +H Lus10040425 62 YECRTCNRTFPSFQALGGHRASH 84 99**********99999998887 PP
2	zf-C2H2	13	0.0003	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H Lus10040425 135 HECGQCGAEFNSGQALGGHMRRH 157 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.6E-12	61	86	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.02E-8	61	84	No hit	No description
PROSITE profile	PS50157	10.429	62	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.09	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.02E-8	130	157	No hit	No description
Pfam	PF13912	3.5E-12	134	159	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.115	135	162	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.07	135	157	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	137	157	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MANCLILLAQ GNSSFFTNNH INATISSTVN NNNIANGKFT SRKFMETSGG VEGGGKVGYY 60 VYECRTCNRT FPSFQALGGH RASHKKPKNL LVTNNLFLAT APPYNDVTNF LQLSSGRGLV 120 ANNHKGNNNS YNRVHECGQC GAEFNSGQAL GGHMRRHRAP PPTITTNLSL LASNNDLRTT 180 S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040425

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031622.1	6e-47	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1Q3CDB3	1e-46	A0A1Q3CDB3_CEPFO; Zf-C2H2_6 domain-containing protein
STRING	Lus10040425	1e-130	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-40	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10040425