PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039324
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 394aa    MW: 43601.8 Da    PI: 4.2085
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039324genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20117167155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrdp++   r+r +lg++ taeeAa  +++a+ kl+g
  Lus10039324 117 KKFRGVRQRP-WGKWAAEIRDPVK---RQRLWLGTYNTAEEAAMVYDNAAIKLRG 167
                  59********.**********755...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-12118167IPR001471AP2/ERF domain
SMARTSM003802.3E-37118181IPR001471AP2/ERF domain
PROSITE profilePS5103223.222118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-30118174IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21118174IPR016177DNA-binding domain
CDDcd000184.11E-32119174No hitNo description
PRINTSPR003671.1E-9119130IPR001471AP2/ERF domain
PRINTSPR003671.1E-9141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDPSFLCPAK YTEHRSLTRK YITTAKPSLK RRKSPAMESG HPTRVVRISV TDPDATDSSS  60
DEESEFFGRR RVKRYVEEIS IGCEEVSTAA AAPALPARKR TVAEEVRPVQ SGGGGGKKFR  120
GVRQRPWGKW AAEIRDPVKR QRLWLGTYNT AEEAAMVYDN AAIKLRGPDA QTNFINPIGK  180
EVEKPVESTS VCGYDSGDES SHNNNNLSSP TSVLQFRTDE YSEPAEPLVE PDEPMELLLA  240
EPVGEEEATA GLQFLQECEG ESSHCNNNDI NHNNQITDFY GDDDFSGECY YSPQHLSSFL  300
EESTSFTDDL FNFTGCCEEE AKLLQPPPIA FNDDNESIVA SGAALLQESF SIRCDDIFAD  360
IPNVGNDSAL QENDDDYFQD IGDLFFSEPL VSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20116174362ATERF1
3gcc_A4e-20116174362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039324
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090126.11e-94ethylene-responsive transcription factor CRF4
SwissprotQ9SUE37e-64CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A067JQB63e-93A0A067JQB6_JATCU; Uncharacterized protein
STRINGLus100393240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-56cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]