PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038674
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 425aa    MW: 45367.8 Da    PI: 6.6972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038674genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016171193123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Lus10038674 171 YECKTCSRTFPSFQALGGHRASH 193
                  99**********99999998887 PP
2zf-C2H2120.00064289311123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cg  F++   L  H+r+H
  Lus10038674 289 HECAICGAEFNSGQALGGHMRRH 311
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.87E-8170193No hitNo description
PfamPF139126.4E-13170195IPR007087Zinc finger, C2H2
SMARTSM003550.11171193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367171198IPR007087Zinc finger, C2H2
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SuperFamilySSF576675.87E-8284311No hitNo description
PfamPF139122.3E-12288313IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681289316IPR007087Zinc finger, C2H2
SMARTSM003550.061289311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
METKEVSTVG APTVEPVIRA TAEEVEEVKA DTVMHINKEE EVLPPPLPSP NDGITVLNPV  60
PITQIIKGKR TKRQRVRSPV ASDFSSIGDD VDDDYVYEDD EEIIDDDSRS SSVQLQPPTK  120
EEENMANCLI LLAQGVNETG EIGAGGPPGA ARHCSGGGGG GGGGKAGYYV YECKTCSRTF  180
PSFQALGGHR ASHKKPRNIN NNNSSSSMLS MMIGGGEHIN KTLNNNNHHI NDSIRDMNSC  240
LNLQLNSGGG RVNGGGFTSF YNNINRTSSM FNNNKGTMNN NNNSSSKVHE CAICGAEFNS  300
GQALGGHMRR HRAPAASAAP PSPAAAGFSL LNNNTNRNAQ SFVNGNGYHN HNNGNNNRDG  360
GYGGSSSNNN NNNTNGKRRS MSLELDLNLP APEEKQQQQQ IPPPSPQKKP SLVFQSPALV  420
DCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248255GGRVNGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038674
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100386740.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-31C2H2 family protein