PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WOX | ||||||||
Protein Properties | Length: 193aa MW: 21819.5 Da PI: 10.1426 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.5 | 8.2e-17 | 22 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +L el+++ r+ +a+++++++++l +++ ++V++WFqN++a++++ Lus10038480 22 SRWCPTPEQVMILGELYRSgVRTANASHIQRITAHLsmygKIEGKNVFYWFQNHKARDRQ 81 7*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 112.9 | 1.6e-36 | 20 | 82 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a++RW+PtpeQ++iL ely+sG+rt n+++iqrita+L+ yGkie+kNVfyWFQN+kaR+rqk Lus10038480 20 ASSRWCPTPEQVMILGELYRSGVRTANASHIQRITAHLSMYGKIEGKNVFYWFQNHKARDRQK 82 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-8 | 16 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0043 | 19 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 22 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-14 | 22 | 81 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSPVAASGTV LAASPTNSSA SSRWCPTPEQ VMILGELYRS GVRTANASHI QRITAHLSMY 60 GKIEGKNVFY WFQNHKARDR QKLRRKLIKQ LHQHQHLPSY DHHQNQYSTN LINNNSFLLN 120 YFGYAPTPSH PPPHRLLHQE GRFGVERGAS SSSQVIVERV EANSNGYDDD KQQPMIKTLQ 180 LFPVKSTNLK ED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038480 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021666132.1 | 7e-47 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A059D5E3 | 2e-43 | A0A059D5E3_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A1Q3BTT3 | 7e-44 | A0A1Q3BTT3_CEPFO; Homeobox domain-containing protein | ||||
STRING | Lus10038480 | 1e-143 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 5e-39 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10038480 |