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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lus10037939 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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| Family |
NAC |
| Protein Properties |
Length: 405aa MW: 45349.4 Da PI: 6.2015 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10037939 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.5 | 2.2e-52 | 32 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96
l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+evdiyk ePwdL +++k++++ewyfFs dkky +g r nrat +gyWkatgkd+e+ + +
Lus10037939 32 LAPGFRFHPTDEELVIYYLKRKVGNKPVRF-NAIAEVDIYKNEPWDLAdkSRLKSRDQEWYFFSALDKKYGNGARMNRATGKGYWKATGKDREIRR-D 127
579************************999.89**************75348899999*************************************9.9 PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128
++l +kktLvf++grap g++t+Wvmheyrl
Lus10037939 128 NQLLAMKKTLVFHSGRAPGGQRTNWVMHEYRL 159
99****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009555 | Biological Process | pollen development |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MPRETCAPLP LVPASPLQSQ PPAVGASAGG VLAPGFRFHP TDEELVIYYL KRKVGNKPVR 60
FNAIAEVDIY KNEPWDLADK SRLKSRDQEW YFFSALDKKY GNGARMNRAT GKGYWKATGK 120
DREIRRDNQL LAMKKTLVFH SGRAPGGQRT NWVMHEYRLV DEELERMGTL QGDSYVLCRV 180
FHKNNIGPPN GNRYAPFLEE EWDDSRAVLV PGEDVADEVV ACNEMNNMEQ NESVEMEGDA 240
PMCVLNTEAP FPLIQYKRRK HGHDYDSNGS EKSRTTQDLC SSTTTTATTT TNTTDMMMTT 300
TAATNTAISA LLEFSLMEPK ERTPAPPPSP KEPPFPPASL ESLVPSGCMK LINDLQREVH 360
KVSVERETLK MEVMSAQAMI YILQSRIDAL NKENGDLKRS LREG*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 4e-49 | 32 | 185 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 4e-49 | 32 | 185 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 4e-49 | 32 | 185 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 4e-49 | 32 | 185 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 4e-49 | 32 | 185 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 4e-49 | 32 | 185 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 4e-49 | 32 | 185 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 4e-49 | 32 | 185 | 20 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
