PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036719
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 447aa    MW: 50196.8 Da    PI: 6.8738
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036719genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.17.1e-1675134155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Lus10036719  75 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 134
                  789******************988854566447*************************97 PP
2AP252.11.6e-16177228155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Lus10036719 177 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 228
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-1275134IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1675144IPR016177DNA-binding domain
CDDcd000181.40E-1975144No hitNo description
Gene3DG3DSA:3.30.730.109.0E-1676143IPR001471AP2/ERF domain
PROSITE profilePS5103219.78376142IPR001471AP2/ERF domain
SMARTSM003805.6E-2576148IPR001471AP2/ERF domain
PRINTSPR003673.5E-57788IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18177238IPR016177DNA-binding domain
PfamPF008475.8E-12177228IPR001471AP2/ERF domain
CDDcd000185.44E-25177238No hitNo description
Gene3DG3DSA:3.30.730.104.0E-18178237IPR001471AP2/ERF domain
PROSITE profilePS5103218.953178236IPR001471AP2/ERF domain
SMARTSM003802.7E-26178242IPR001471AP2/ERF domain
PRINTSPR003673.5E-5218238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEMASGNIIP DVKRRYGSMQ GDDGMVTETK FPKRRRRGPS VVGTLSSNKE GPQPSSTAAN  60
TSTSTTTAPI VKRSSRFRGV SRHRWTGRYE AHLWDKGSWN PTQKKKGKQV YLGAYDEEES  120
AARAYDLAAL KYWGMSAFTN FPVSDYENEL EIMKNVTKEE YLASLRRRSS GFSRGVSKYR  180
GVARHHHNGR WEARIGRVFG NKYLYLGTYS TQEEAARAYD IAAIEYRGIN AVTNFDLSTY  240
IRWLKPESDI IPSEQQQQHQ IESKLDLESF SLAAAATTDS SNPSMAYFPS EKTTTPPPSL  300
RILDNLNENP LEQQQQQQMF HAKSMFNLSI KNSSSSSSLL SLPSPTTPSP SALGLLLKSS  360
VFKQLVEKNL NTNDDEEESF QLPQFGAHKE ESVEQEEDML FCHGRSSFNL EWKEEEESLL  420
PLFNSSAGEG GQSFWDGSLT IPSPFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036719
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022775800.11e-146AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9WPR51e-140A0A2C9WPR5_MANES; Uncharacterized protein
STRINGLus100367190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-80AP2 family protein