PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10033885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28338.4 Da PI: 6.1463 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 111 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + + r++lg+f+t+eeAa a+++a+++l g Lus10033885 111 AYRGVRTRP-WGKYAAEIRDSTR---HgVRVWLGTFDTPEEAALAYDQAALSLQG 161 69****999.**********422...25***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.45E-28 | 110 | 170 | No hit | No description |
SuperFamily | SSF54171 | 2.48E-22 | 110 | 170 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.721 | 111 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-30 | 111 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-34 | 111 | 175 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-13 | 111 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLDPYYNYYS SSPSPLDYLS SPPPPPHTHS PPPPPPQTHY WGPDGGELQQ EEEEASNFLL 60 YPPSNSTSSS DPCSQAPPPP PLEEATSSSG KKKKKQTKNN NSTATTVYKS AYRGVRTRPW 120 GKYAAEIRDS TRHGVRVWLG TFDTPEEAAL AYDQAALSLQ GSRAVLNFPA EEVSRSLEEI 180 GCGLGECSSP AQALKQTNYV KRKALSRKRK GKRGVIDQGD LGIANSNPII KKEEVVEFED 240 LGTAFLEQLL FESSTTNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-27 | 112 | 171 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 95 | GKKKKKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10033885 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX174447 | 1e-78 | JX174447.1 Linum usitatissimum clone LuBAC375N24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251362.1 | 3e-47 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 7e-45 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
STRING | Lus10033885 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 9e-42 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10033885 |
Publications ? help Back to Top | |||
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