PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033463
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 349aa    MW: 38207.8 Da    PI: 6.1549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033463genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20169218255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Lus10033463 169 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 218
                  59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.02E-34168228No hitNo description
SMARTSM003807.0E-38169232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-32169227IPR001471AP2/ERF domain
PROSITE profilePS5103223.143169226IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-23169227IPR016177DNA-binding domain
PRINTSPR003673.3E-11170181IPR001471AP2/ERF domain
PfamPF008473.4E-14170218IPR001471AP2/ERF domain
PRINTSPR003673.3E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAATMDFFSS GPVQSDLYEG SELMEALEPF MKSASPPSSA PSPPPPPPSF IPSSETLVSS  60
SSSSSSFPST SYSYGDYISF SSPSSFPAAA LPQFPPPQQQ AFIYPDGSNG FFSTQDPFLY  120
QQTEQIYQMQ TTNNLCFQNL PAQQNTLSFL SPRATPMKLT GSPPKAAKLY RGVRQRHWGK  180
WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYKLRGDF ARLNFPNLRH QGSLIEGKFG  240
EYKPLHSTVD AKLQAICQSL AETQKKGKAV GKKKSSKKKE EVVAVKEEKV SPVVTDHSDF  300
SGGSSSSPLS DLTFPDYQDA AAPLDLDSGN LNLEKYPSYE IDWDSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21168226160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021638221.11e-118ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E42e-79RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLK9UTK31e-114K9UTK3_JATCU; Ethylene-responsive element binding-factor
STRINGLus100334630.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-53related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]