PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030671
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 452aa    MW: 50135.6 Da    PI: 8.0526
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030671genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.7e-1585144155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Lus10030671  85 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqkKKgKQVYLGAYDDEEAAARAYDLAALKYWG 144
                  789******************888855555447*************************98 PP
2AP256.19e-18187238155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  Lus10030671 187 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 238
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-1685153IPR016177DNA-binding domain
PfamPF008471.2E-1185144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1486152IPR001471AP2/ERF domain
PROSITE profilePS5103219.34886152IPR001471AP2/ERF domain
SMARTSM003807.7E-2486158IPR001471AP2/ERF domain
PRINTSPR003673.6E-58798IPR001471AP2/ERF domain
CDDcd000182.12E-24187248No hitNo description
PfamPF008473.3E-13187238IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17187248IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17188247IPR001471AP2/ERF domain
PROSITE profilePS5103218.742188246IPR001471AP2/ERF domain
SMARTSM003801.4E-25188252IPR001471AP2/ERF domain
PRINTSPR003673.6E-5228248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEMMNVKNEE IVSGSRRGRG DGGKKGGGDA GGGRATRERD XXXXXXXXXX XXXXITNSDR  60
GINKKKNSRT EGAAAGSSTA VKRSSRFRGV SRHRWTGRYE AHLWDKLSWN VTQKKKGKQV  120
YLGAYDDEEA AARAYDLAAL KYWGTSTFTN FQISDYEKEV EIMKNVTREE YLASLRRKSS  180
GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYG TQEEAARAYD IAAIEYRGIN  240
AVTNFDLSTY IRWLKPDHQG NPTSIPPANH QHHHQTIISE TNIINDGTNN TTPTTDYFVT  300
NNNNNHNQQP EEELLFQDYL SSPPKQHAFQ EPTSAAAVIT NNKTTTTSSS SSSTSTAAGA  360
GAPSALGLLL RSTMFRELVE KNVYDVIQVG NHHHEVEDDY GGMFNYDDGI IGGGDGGDGF  420
APFGYPSSSN GTTKVVDDGI ELHERELQFL F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127GGKKGGG
22433KGGGDAGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030671
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005069.11e-139PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2P5AFV31e-137A0A2P5AFV3_PARAD; AP2/ERF transcription factor
STRINGLus100306710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-78AP2 family protein