PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030097
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 219aa    MW: 24411.4 Da    PI: 7.1319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030097genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19554154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + 
  Lus10030097  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRIWLGTFETAEEAARAYDQAAILMS 54
                 59*******9.**********8.....334*********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.80E-35565No hitNo description
Gene3DG3DSA:3.30.730.105.7E-33664IPR001471AP2/ERF domain
SMARTSM003804.2E-40669IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21665IPR016177DNA-binding domain
PROSITE profilePS5103221.878663IPR001471AP2/ERF domain
PfamPF008475.6E-12653IPR001471AP2/ERF domain
PRINTSPR003671.4E-10718IPR001471AP2/ERF domain
PRINTSPR003671.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR IWLGTFETAE EAARAYDQAA ILMSGRNAKT  60
NFPISQSSDD NTKLPSSQSP HNGLSEKLHA KLRKCSKTPS PSMTCLRLDT ENSHIGVWQK  120
RAGQRSDSNW VMTVHLGNQS SSDNSPEVAT PTLAPEVPKI RPGGMEEEER IALQMIEELL  180
NRNCPSPSRG FGAEGTETAA EEEVEELNQL LVEDGFFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-16564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-16370270ATERF1
3gcc_A4e-16370270ATERF1
5wx9_A8e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030097
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475843.13e-97ethylene-responsive transcription factor WIN1
RefseqXP_012078789.12e-97ethylene-responsive transcription factor WIN1
RefseqXP_024034238.14e-97ethylene-responsive transcription factor WIN1
SwissprotQ9XI339e-78WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A067GKV67e-96A0A067GKV6_CITSI; Uncharacterized protein
TrEMBLA0A067KJG85e-96A0A067KJG8_JATCU; Uncharacterized protein
TrEMBLA0A2H5QF587e-96A0A2H5QF58_CITUN; Uncharacterized protein
TrEMBLV4WCL38e-96V4WCL3_9ROSI; Uncharacterized protein
STRINGLus100300971e-162(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.15e-70ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]