PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028880
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 492aa    MW: 53635 Da    PI: 4.9601
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028880genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-11139194255
          AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GV++++++gr++A+++d  s+n+ ++++ + g ++ +e Aa+ ++ a++k++g
  Lus10028880 139 AFRGVTRHRWTGRFEAHLWDkSSWNNmHNRKGRQGAYDEEEAAARTYDLAALKYWG 194
                  58******************7777**97766666********************98 PP
2AP253.46.5e-17237288155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa+a++ a+++++g
  Lus10028880 237 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFNTQEEAAEAYDMAALEYRG 288
                  89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-14138203No hitNo description
SuperFamilySSF541712.09E-12138203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-9139202IPR001471AP2/ERF domain
SMARTSM003804.8E-15139208IPR001471AP2/ERF domain
PROSITE profilePS5103217.359139202IPR001471AP2/ERF domain
PRINTSPR003671.1E-5140151IPR001471AP2/ERF domain
PfamPF008476.0E-8140194IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18237297IPR016177DNA-binding domain
PfamPF008472.9E-12237288IPR001471AP2/ERF domain
CDDcd000181.21E-23237298No hitNo description
PROSITE profilePS5103218.887238296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-19238296IPR001471AP2/ERF domain
SMARTSM003804.8E-26238302IPR001471AP2/ERF domain
PRINTSPR003671.1E-5278298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MKSPPSNQKK NNKRQRTIIS PSSSSSSLSS LTSNSSCSSN SSNNSSPQSP SCSCSSSPCS  60
SCDLSAVIVH PPPPPNHDLE EEEKTAAPPK AAKRRRRTQS SKKGTGNNNG GDRPPKSNDE  120
DKIDDPLPPP SAQGKRSSAF RGVTRHRWTG RFEAHLWDKS SWNNMHNRKG RQGAYDEEEA  180
AARTYDLAAL KYWGPATTLN FAVEGYEKEM EEMSKVSREE YLASLRRRSS GFSRGVSKYR  240
GVARHHHNGR WEARIGRVLG NKYLYLGTFN TQEEAAEAYD MAALEYRGSN AVTNFDVAIY  300
VDRLKSKGVQ VDQFLQPITD VAAAEVAPEL YMNDDNAAKL EPSSASSPLP LPSSSSEQEV  360
AMMMAMPLPP EMPPTTTTTN NGGSMMELLE LENDENWSFC FEYPEDNAAS SQLAPEEGCC  420
ILPELFGVDG GGFQLEDIDY LVFDSYPTTA AADDDDVGKT EKEKLLLSEE DHGGGGSRSP  480
SCSTTTSVSC N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894PKAAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525305.11e-109ethylene-responsive transcription factor WRI1 isoform X1
TrEMBLB9SH361e-107B9SH36_RICCO; AP2-type transcription factor
STRINGLus100288800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98593241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-85AP2 family protein