PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027416
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 585aa    MW: 66165.8 Da    PI: 6.4717
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027416genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.71.1e-22206259155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k++++Wt  LH++F++av++  G ekA Pk+ile+m v+ Lt+e+v+SHLQkYRl
  Lus10027416 206 KAKVVWTGSLHNQFLQAVNHF-GLEKAYPKRILEFMRVPWLTRENVASHLQKYRL 259
                  6799*****************.********************************7 PP
2Response_reg562.2e-19331371109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   +l+vd++p+ + ++  +l+  +y++ ++++++ ea++ l+++++Dl+l+ ++m +m G ++++  r+ +  lp iv++a ++e  +++ l+ Ga  +
   Lus10027416  33 ILVVDEDPTCLAIVIALLK--RYSSSQAFKSPLEAVKVLEKEEFDLVLMNLDMHEMGGKNFMQVTRQIQ--LPTIVMSADDNEHEMVKTLEDGAALY 125
                   89*****************..777789**********************************99888866..************************** PP

                   EESS--HHHHHH CS
  Response_reg  98 lsKpfdpeelvk 109
                   l+Kp+++e+l +
   Lus10027416 126 LMKPINKEDLKN 137
                   *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-2227143IPR011006CheY-like superfamily
SMARTSM004481.5E-1531139IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.3E-2431166No hitNo description
PROSITE profilePS5011026.55132143IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-1633137IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.85E-1934142No hitNo description
Gene3DG3DSA:1.10.10.605.2E-24203263IPR009057Homeodomain-like
SuperFamilySSF466891.52E-17204263IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22206260IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MKGSSQSCEM ASQTQPTLLQ THQPNKSFLN IKILVVDEDP TCLAIVIALL KRYSSSQAFK  60
SPLEAVKVLE KEEFDLVLMN LDMHEMGGKN FMQVTRQIQL PTIVMSADDN EHEMVKTLED  120
GAALYLMKPI NKEDLKNLWK YAYTTRTNDV HDHEEDTKYA SSVNNIKSTH DDHSAKNTTH  180
NKKIKLGKKR SKEDDDDQED CHSRKKAKVV WTGSLHNQFL QAVNHFGLEK AYPKRILEFM  240
RVPWLTRENV ASHLQKYRLF LTKVSEKGLT SSTTVSSKGM NSNFFDLFSL YKRMKPEDLE  300
MIKRGRRRSP LSGYPYKSSN FGTLRYPNDL PKFQDASAYN NLRTTLLDYC DNYNNPYPNI  360
KHDFSMNNHF NGGNVHSRNS ASFNVNVTST STRNRSPGYT SSMQLPSFST NPLPQLSVDH  420
RGINLELPHS SRQVSLFESS SGRINNTPNI DINGDTTVCD NMFNYQEFDN IGTNGILQLD  480
SGIPPSNQIN NVETNNIINE FSQPSLSSEL FTAAYKDRDT NHEHVNPNNF GGSSNLVNDD  540
QGGKETMEVG SDESSPMKIL PTSKDTDWAD EFLISLLGDD WETG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19203265264ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027416
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100274160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-46response regulator 2