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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25358.1 Da PI: 5.1733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.1 | 5.7e-15 | 45 | 96 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 + ++GVr ++ ++Wv+e+r p+ + +r++lg++ t+e+Aa+a++ a ++++ge Lus10024491 45 PVFRGVRSRS-GNKWVCELRLPK----KeTRVWLGTYPTPEMAARAHDVASLAFRGE 96 579***9776.9*********84....35**********************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-10 | 45 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.31 | 46 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 46 | 105 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-21 | 46 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-26 | 46 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-7 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.46E-24 | 47 | 105 | No hit | No description |
PRINTS | PR00367 | 5.9E-7 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEMMYSSGQH YSESSSSSSS SITQLASEVP KRKTGRKVLK ETRHPVFRGV RSRSGNKWVC 60 ELRLPKKETR VWLGTYPTPE MAARAHDVAS LAFRGESGCL NFADSAWRLP VPASLDPKDV 120 RKAAAQAAEM FRPQSCFPVA AAAEEEEEER NYSCFSTSSY SNNNNYYVDE EEVLEMPRLL 180 SEMAEGLLLS PPWTYGLETG HNQWGHFVET TDDDADHYNW SLWN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024491 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087007.1 | 9e-73 | dehydration-responsive element-binding protein 1A | ||||
TrEMBL | A0A067JZT2 | 2e-71 | A0A067JZT2_JATCU; Uncharacterized protein | ||||
STRING | Lus10024491 | 1e-167 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-53 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10024491 |