PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WOX | ||||||||
Protein Properties | Length: 234aa MW: 25824.3 Da PI: 6.1522 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.5 | 8.5e-22 | 108 | 168 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ n +p++++++e++++l +++e++V++WFqNrRa+ k+ Lus10023561 108 RQRWTPTPVQLQILEQIFEQgNGTPTKQKIKEITTQLsqhgQISETNVYNWFQNRRARSKR 168 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.8 | 5e-33 | 108 | 170 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it++L+++G+i+++NV++WFQNr+aR+++kq Lus10023561 108 RQRWTPTPVQLQILEQIFEQGNGTPTKQKIKEITTQLSQHGQISETNVYNWFQNRRARSKRKQ 170 79***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.28E-20 | 103 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.046 | 104 | 169 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-18 | 105 | 172 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.8E-15 | 106 | 173 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-19 | 108 | 168 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.08E-14 | 108 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEWDSTAVGS NHKRHHESCN NNNNGDPNTA NSSSSPNDLL YVKVMTDEQL ETLRKQIAVY 60 STICEQLVEM HKTLSSSHQD FAAAGRLGNM YLDTLMGGGG GQKLSGGRQR WTPTPVQLQI 120 LEQIFEQGNG TPTKQKIKEI TTQLSQHGQI SETNVYNWFQ NRRARSKRKQ HLTNLPTSAA 180 AGTNNNDNAG ATSGDLSSEV ETTTATEVDS LNDQDIIIQL LAQSQYQEKQ CWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 169 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023561 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024036364.1 | 2e-74 | WUSCHEL-related homeobox 13 isoform X2 | ||||
Swissprot | Q5QMM3 | 4e-64 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A067G7G2 | 2e-73 | A0A067G7G2_CITSI; Uncharacterized protein | ||||
STRING | Lus10023561 | 1e-174 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 7e-63 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Lus10023561 |
Publications ? help Back to Top | |||
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