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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WOX | ||||||||
Protein Properties | Length: 120aa MW: 14049 Da PI: 10.4408 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.1 | 8.1e-15 | 2 | 50 | 14 | 57 |
HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +Leel+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Lus10023332 2 ILEELYRSgVRTPNASHIQRITAHLsmygKIEGKNVFYWFQNHKARDRQ 50 8******99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 95.2 | 5.7e-31 | 1 | 51 | 14 | 64 |
Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +iLeely+sG+rtPn+++iqrita+L+ yGkie+kNVfyWFQN+kaR+rqk Lus10023332 1 MILEELYRSGVRTPNASHIQRITAHLSMYGKIEGKNVFYWFQNHKARDRQK 51 69************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.313 | 1 | 51 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-4 | 2 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-12 | 2 | 50 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.76E-7 | 2 | 51 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MILEELYRSG VRTPNASHIQ RITAHLSMYG KIEGKNVFYW FQNHKARDRQ KLRRKLIKQL 60 HQHQPQHLPS YDHLQNQSSS INNNSFLLNY FGYAPTPPHP PPHRPLHQGD DWFVLLGFG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023332 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046418.1 | 1e-34 | PREDICTED: WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A059D5E3 | 5e-33 | A0A059D5E3_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A2C9V2A3 | 3e-33 | A0A2C9V2A3_MANES; Uncharacterized protein (Fragment) | ||||
STRING | Lus10023332 | 6e-84 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 6e-32 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10023332 |